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Domain combinations for _gap_,56672,53098,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Danio_rerio_76_9   (Zebrafish)   2
Oikopleura_dioica 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   39
Bombyx_mori_   (Domestic silkworm)   14
Nasonia_vitripennis_   (Jewel wasp)   8
Tribolium_castaneum_3.0   (Red flour beetle)   4
Acyrthosiphon_pisum_   (Pea aphid)   2
Strigamia_maritima_22 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 6
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 4
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 21
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Rhizopus_oryzae_RA_99-880_ 3
Pisolithus_tinctorius_Marx_270_v1.0 0
Laccaria_bicolor_S238N-H82_ 1
Podospora_anserina_ 0
Chaetomium_globosum_CBS_148.51_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 0
Alternaria_brassicicola_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Aspergillus_oryzae_RIB40_ 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Yarrowia_lipolytica_CLIB122 10
Vanderwaltozyma_polyspora_DSM_70294_ 3
Schizosaccharomyces_pombe   (Fission yeast)   1
Dictyostelium_discoideum 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   87
Glycine_max_v109   (Soybean)   6
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   76
Oryza_sativa_v193   (Rice)   72
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Musa_balbisiana   (Balbis banana)   9
Volvox_carteri_f._nagariensis_ 1
Porphyridium_purpureum_02_2012 2
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_TREU927_v4.1 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 37
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 1
Perkinsus_marinus_ATCC_50983_ 11
Symbiodinium_minutum_clade_B1_v1.2 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5
Cryptococcus_neoformans_B-3501A_ 2
Schizosaccharomyces_pombe_972h-_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   98
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   12
Trypanosoma_brucei_Lister_427_v4.1 0

Longest transcript per gene
Genome     Number
Danio_rerio_69_9   (Zebrafish)   2

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 220
NCBI_2017_08_genome 459
Uniprot_2018_03_genome 7281

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