SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,56731,52540 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56731 - DNA primase core
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Sorex_araneus_76_1   (European shrew)   1
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Lottia_gigantea_   (Owl limpet)   1
Capitella_sp._I_ 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 1
Phycomyces_blakesleeanus_ 1
Mucor_circinelloides_ 1
Dictyostelium_discoideum 1
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 4
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Fragaria_vesca_   (Wild strawberry)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Aquilegia_coerulea_v195 6
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 4
Oryza_punctata_22 1
Oryza_nivara_22 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Physcomitrella_patens 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 0
Ectocarpus_siliculosus 1
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 2
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Synechococcus_sp._PCC_7502 0
Geitlerinema_sp._PCC_7407 0
Bacteroides_sp._CF50 1
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_denticola_F0289 2
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_thetaiotaomicron_VPI-5482 3
Bacteroides_fragilis_YCH46 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 0
Acidovorax_ebreus_TPSY 0
Janthinobacterium_sp._Marseille 0
Magnetococcus_marinus_MC-1 0
Wolbachia_sp._wRi 0
Bartonella_tribocorum_CIP_105476 0
Bartonella_henselae_str._Houston-1 0
Bartonella_quintana_str._Toulouse 0
Bartonella_bacilliformis_KC583 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Prevotella_sp._oral_taxon_299_str._F0039 2
Porphyromonas_gingivalis_TDC60 1
Porphyromonas_gingivalis_W83 1
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 3
Bacteroides_fragilis_NCTC_9343 2
Wolbachia_endosymbiont_of_Drosophila_melanogaster 0
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 0
Bartonella_quintana_RM-11 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1

Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Sorex_araneus_69_1   (European shrew)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 1
Uniprot_2018_03_genome 5274
NCBI_2017_08_genome 1148
TargetDB__(Targets) 4
UniProt__viral_sequences_(Viral) 5
Protozoadb_2010_08_(Protozoadb) 2
NCBI_viral_sequences_(Viral) 17
STRING_v9.0.5_(STRING) 28

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]