SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,56784,52113 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56784 - HAD-like
52113 - BRCT domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Drosophila_willistoni_1.3 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 1
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_purpureum_ 1
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 3
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   8
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 1
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   0
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   2
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 3
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   1
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 3
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_tauri_ 1
Micromonas_sp._RCC299_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 2
Cryptosporidium_hominis 1
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Emiliania_huxleyi_CCMP1516_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Histoplasma_capsulatum_H143 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2

Longest transcript per gene
Genome     Number
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 13
NCBI_2017_08_genome 174
Uniprot_2018_03_genome 1290
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]