SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57196,57196,57196,57184,57184,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gallus_gallus_76_4   (Chicken)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oikopleura_dioica 1
Monosiga_brevicollis_ 0

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1

Longest transcript per gene
Genome     Number
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Gadus_morhua_69_1   (Atlantic cod)   0

Others
Genome     Number
Uniprot_2018_03_genome 736
NCBI_2017_08_genome 44
STRING_v9.0.5_(STRING) 2

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