SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57196,57424,57424,57424,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57196 - EGF/Laminin
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Felis_catus_69   (Domestic cat)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 51
NCBI_2017_08_genome 4

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