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Domain combinations for _gap_,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   35
Pan_troglodytes_76_2.1.4   (Chimpanzee)   10
Gorilla_gorilla_76_3.1   (Western gorilla)   13
Pongo_abelii_76_2   (Sumatran orangutan)   10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   11
Papio_anubis_76   (Olive baboon)   7
Macaca_mulatta_76_1   (Rhesus monkey)   14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_76_3   (Small-eared galago)   9
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   8
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   9
Ovis_aries_76_3.1   (Sheep)   16
Vicugna_pacos_76_1   (Alpaca)   10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   9
Canis_familiaris_76_3.1   (Dog)   10
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   10
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   9
Erinaceus_europaeus_76   (Western European hedgehog)   12
Procavia_capensis_76_1   (Cape rock hyrax)   13
Loxodonta_africana_76_3   (African savanna elephant)   12
Echinops_telfairi_76   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   10
Saccoglossus_kowalevskii_v3.0 22
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   10
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   14
Anolis_carolinensis_76_2.0   (Green anole)   6
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   5
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   7
Astyanax_mexicanus_76   (Mexican tetra)   9
Danio_rerio_76_9   (Zebrafish)   14
Oikopleura_dioica 19
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   14
Ciona_intestinalis_76   (Vase tunicate)   10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   40
Adineta_vaga 15
Octopus_bimaculoides_280 7
Crassostrea_gigas_22   (Pacific oyster)   26
Lottia_gigantea_   (Owl limpet)   22
Helobdella_robusta_ 13
Capitella_sp._I_ 25
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   5
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 5
Drosophila_persimilis_1.3 6
Drosophila_suzukii 5
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 5
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   12
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 1
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 14
Meloidogyne_incognita_   (Southern root-knot nematode)   8
Meloidogyne_hapla_ 8
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   10
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 18
Caenorhabditis_remanei_ 28
Caenorhabditis_elegans_76_235   (Roundworm)   26
Caenorhabditis_briggsae_2 15
Trichinella_spiralis_22 15
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   8
Schistosoma_mansoni_ 5
Mnemiopsis_leidyi   (Sea walnut)   3
Thelohanellus_kitauei 14
Acropora_digitifera_v1.0 26
Nematostella_vectensis_1.0   (Starlet sea anemone)   19
Hydra_vulgaris 11
Amphimedon_queenslandica 9
Trichoplax_adhaerens_ 12
Proterospongia_sp._ATCC_50818_ 10
Monosiga_brevicollis_ 5
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Yarrowia_lipolytica_CLIB122 1
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 2
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   3
Prunus_persica_v139   (Peach)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 0
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3
Oryza_sativa_v193   (Rice)   2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 2
Giardia_lamblia_2.3 4
Ectocarpus_siliculosus 1
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 1
Cryptosporidium_hominis 1
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 1
Theileria_parva__ 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_chabaudi_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 5
Stigmatella_aurantiaca_DW4/3-1 0
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   19
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   22
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Myxococcus_stipitatus_DSM_14675 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   10
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_69_3.1   (Western gorilla)   10
Pongo_abelii_69_2   (Sumatran orangutan)   10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9
Macaca_mulatta_69_1   (Rhesus monkey)   9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   9
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   8
Sus_scrofa_69_10.2   (Pig)   6
Bos_taurus_69_3.1   (Cattle)   9
Vicugna_pacos_69_1   (Alpaca)   10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   9
Canis_familiaris_69_3.1   (Dog)   7
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   10
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   9
Erinaceus_europaeus_69   (Western European hedgehog)   12
Procavia_capensis_69_1   (Cape rock hyrax)   13
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   10
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   9
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   7
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13
Ciona_intestinalis_69   (Vase tunicate)   10
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   16
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   46
Homo_sapiens__(NCBI_version)   (Human)   14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Malus_x_domestica_(Duplicate)   (Apple)   3
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_2017_08_genome 5662
Protozoadb_2010_08_(Protozoadb) 18
NCBI_viral_sequences_(Viral) 7
TargetDB__(Targets) 21
STRING_v9.0.5_(STRING) 483
UniProt__viral_sequences_(Viral) 33
Uniprot_2018_03_genome 22045

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