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  Home > SCOP hierarchy > Domain combination - _gap_,57196,_gap_,56112

Domain combinations for _gap_,57196,_gap_,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57196 - EGF/Laminin
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Sphaeroforma_arctica_JP610_ 1
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 12
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9
Capsella_rubella_v183 6
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   5
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   3
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   3
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   6
Aquilegia_coerulea_v195 6
Triticum_urartu_22 12
Triticum_aestivum_22   (Bread wheat)   26
Aegilops_tauschii_22 19
Brachypodium_distachyon_   (Stiff brome)   16
Oryza_barthii_22   (African wild rice)   12
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 18
Oryza_glaberrima   (African rice)   10
Oryza_punctata_22 11
Oryza_nivara_22 12
Oryza_brachyantha_22   (Malo sina)   20
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   19
Oryza_sativa_v193   (Rice)   19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   21
Setaria_italica_v164   (Foxtail millet)   10
Zea_mays_subsp._mays_   (Maize)   8
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   11
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   5
Amborella_trichopoda_22 3
Naegleria_gruberi_ 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   17
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   17

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   5

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 69
NCBI_2017_08_genome 526
Uniprot_2018_03_genome 6390

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.