SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,57196,_gap_,57440,50494 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57196 - EGF/Laminin
57440 - Kringle-like
50494 - Trypsin-like serine proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Bos_taurus_76_3.1   (Cattle)   1
Sorex_araneus_76_1   (European shrew)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Bos_taurus_69_3.1   (Cattle)   1
Sorex_araneus_69_1   (European shrew)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 6
Uniprot_2018_03_genome 630
NCBI_2017_08_genome 166

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]