SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57256,_gap_,49265,_gap_,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57256 - Elafin-like
49265 - Fibronectin type III
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ochotona_princeps_76   (American pika)   1
Sus_scrofa_76_10.2   (Pig)   0
Ovis_aries_76_3.1   (Sheep)   0

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ochotona_princeps_69   (American pika)   1
Sus_scrofa_69_10.2   (Pig)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 50
NCBI_2017_08_genome 15

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