SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57256,_gap_,57196,_gap_,49265,_gap_,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57256 - Elafin-like
57196 - EGF/Laminin
49265 - Fibronectin type III
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   2
Bos_taurus_76_3.1   (Cattle)   1
Canis_familiaris_76_3.1   (Dog)   1
Pteropus_vampyrus_76_1   (Large flying fox)   2

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Bos_taurus_69_3.1   (Cattle)   1
Canis_familiaris_69_3.1   (Dog)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Uniprot_2018_03_genome 222
NCBI_2017_08_genome 21
STRING_v9.0.5_(STRING) 2

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