SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57424,57184,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57184 - Growth factor receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Mus_musculus_76_38   (House mouse)   1
Felis_catus_76_6.2   (Domestic cat)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0

Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Mus_musculus_69_38   (House mouse)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 63
NCBI_2017_08_genome 9

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