SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57424,57424,57424,57424,57196,57196,63825,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57196 - EGF/Laminin
57196 - EGF/Laminin
63825 - YWTD domain
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Mus_musculus_76_38   (House mouse)   1
Bos_taurus_76_3.1   (Cattle)   1
Loxodonta_africana_76_3   (African savanna elephant)   0

Longest transcript per gene
Genome     Number
Bos_taurus_69_3.1   (Cattle)   1
Loxodonta_africana_69_3   (African savanna elephant)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Uniprot_2018_03_genome 1242
NCBI_2017_08_genome 95

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