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Domain combinations for _gap_,57424,57424,57424,57424,57424,57196,57196 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57196 - EGF/Laminin
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   0
Vicugna_pacos_76_1   (Alpaca)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Trichinella_spiralis_22 0
Mnemiopsis_leidyi   (Sea walnut)   0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0

Longest transcript per gene
Genome     Number
Ochotona_princeps_69   (American pika)   0
Sus_scrofa_69_10.2   (Pig)   0
Vicugna_pacos_69_1   (Alpaca)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 75
NCBI_2017_08_genome 1

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