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  Home > SCOP hierarchy > Domain combination - _gap_,57424,57424,57424,57424,57424,57424,57424,57424,57184,63825,_gap_,63825,57196,63825,57196,63825,_gap_

Domain combinations for _gap_,57424,57424,57424,57424,57424,57424,57424,57424,57184,63825,_gap_,63825,57196,63825,57196,63825,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57184 - Growth factor receptor domain
63825 - YWTD domain
63825 - YWTD domain
57196 - EGF/Laminin
63825 - YWTD domain
57196 - EGF/Laminin
63825 - YWTD domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Equus_caballus_76_2   (Horse)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Nasonia_vitripennis_   (Jewel wasp)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 11
Uniprot_2018_03_genome 8379
NCBI_2017_08_genome 128

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.