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  Home > SCOP hierarchy > Domain combination - _gap_,57567,57603,_gap_,57567,_gap_,57567,_gap_

Domain combinations for _gap_,57567,57603,_gap_,57567,_gap_,57567,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57567 - Serine protease inhibitors
57603 - FnI-like domain
57567 - Serine protease inhibitors
57567 - Serine protease inhibitors

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_76_5.0   (Norway rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Sus_scrofa_76_10.2   (Pig)   0
Felis_catus_76_6.2   (Domestic cat)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Meleagris_gallopavo_76_2   (Turkey)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Lepisosteus_oculatus_76   (Spotted gar)   2
Oryzias_latipes_76_1   (Japanese medaka)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Strigamia_maritima_22 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Sus_scrofa_69_10.2   (Pig)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Meleagris_gallopavo_69_2   (Turkey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Oryzias_latipes_69_1   (Japanese medaka)   2

Others
Genome     Number
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 675
NCBI_2017_08_genome 42

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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