SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,57667 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   92
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   12
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   20
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   18
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   12
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   24
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   8
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   11
Sus_scrofa_76_10.2   (Pig)   14
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   6
Felis_catus_76_6.2   (Domestic cat)   6
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   7
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   7
Erinaceus_europaeus_76   (Western European hedgehog)   13
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_76_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_76_5   (Platypus)   14
Saccoglossus_kowalevskii_v3.0 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   12
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   9
Anas_platyrhynchos_76_1.0   (Mallard)   7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_76_2.0   (Green anole)   9
Xenopus_laevis_   (African clawed frog)   19
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   8
Lepisosteus_oculatus_76   (Spotted gar)   9
Gadus_morhua_76_1   (Atlantic cod)   17
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   15
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   16
Oryzias_latipes_76_1   (Japanese medaka)   25
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   51
Oikopleura_dioica 26
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 13
Octopus_bimaculoides_280 29
Crassostrea_gigas_22   (Pacific oyster)   9
Lottia_gigantea_   (Owl limpet)   13
Helobdella_robusta_ 22
Capitella_sp._I_ 17
Danaus_plexippus_OGS1.0   (Monarch butterfly)   7
Heliconius_melpomene_   (Postman butterfly)   12
Bombyx_mori_   (Domestic silkworm)   31
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   21
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   28
Linepithema_humile_v1.1   (Argentine ant)   47
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   49
Solenopsis_invicta_v.2.2.3   (Red fire ant)   40
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   14
Atta_cephalotes_v1.1 37
Camponotus_floridanus_v3.3   (Florida carpenter ant)   15
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 14
Drosophila_persimilis_1.3 11
Drosophila_suzukii 12
Drosophila_yakuba_1.3 8
Drosophila_simulans_1.3 10
Drosophila_sechellia_1.3 8
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 8
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 10
Megaselia_scalaris_22 18
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   30
Anopheles_darlingi_22   (American malaria mosquito)   11
Anopheles_gambiae_49_3j   (African malaria mosquito)   15
Tribolium_castaneum_3.0   (Red flour beetle)   12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   14
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 15
Daphnia_pulex_   (Common water flea)   15
Strigamia_maritima_22 7
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19
Pristionchus_pacificus_ 37
Meloidogyne_incognita_   (Southern root-knot nematode)   18
Meloidogyne_hapla_ 12
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   15
Caenorhabditis_japonica_ 9
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 9
Caenorhabditis_elegans_76_235   (Roundworm)   10
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 8
Hymenolepis_microstoma_ 8
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 5
Mnemiopsis_leidyi   (Sea walnut)   12
Thelohanellus_kitauei 11
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   8
Hydra_vulgaris 3
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 7
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 10
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 11
Mortierella_verticillata_NRRL_6337_ 8
Phycomyces_blakesleeanus_ 38
Rhizopus_oryzae_RA_99-880_ 26
Mucor_circinelloides_ 19
Rhizomucor_miehei_CAU432_ 17
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 12
Melampsora_laricis-populina_ 10
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 39
Piloderma_croceum_F_1598_v1.0 13
Serpula_lacrymans_var._lacrymans_S7.9_ 7
Coniophora_puteana 8
Hydnomerulius_pinastri_v2.0 11
Paxillus_rubicundulus_Ve08.2h10_v1.0 13
Pisolithus_microcarpus_441_v1.0 19
Pisolithus_tinctorius_Marx_270_v1.0 21
Scleroderma_citrinum_Foug_A_v1.0 26
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   18
Amanita_thiersii_Skay4041_v1.0 9
Amanita_muscaria_Koide_v1.0   (Fly agaric)   29
Galerina_marginata_v1.0 10
Hebeloma_cylindrosporum_h7_v2.0 8
Laccaria_bicolor_S238N-H82_ 16
Agaricus_bisporus_var._bisporus_ 9
Schizophyllum_commune_ 17
Stereum_hirsutum_FP-91666_SS1__v1.0 12
Heterobasidion_annosum_ 26
Gloeophyllum_trabeumv1.0 6
Punctularia_strigosozonata_v1.0 11
Sebacina_vermifera_MAFF_305830_v1.0 23
Fomitiporia_mediterranea_v1.0 8
Tulasnella_calospora_AL13/4D_v1.0 18
Postia_placenta_ 24
Wolfiporia_cocos_MD-104_SS10__v1.0 12
Fomitopsis_pinicolav1.0 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 13
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 7
Trametes_versicolor_v1.0 7
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 6
Magnaporthe_poae_ATCC_64411_22 7
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 5
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 5
Fusarium_graminearum_ 6
Nectria_haematococca_mpVI_ 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 8
Trichoderma_asperellum_CBS_433.97_v1.0 6
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 5
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 7
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5
Trichoderma_harzianum_CBS_226.95_v1.0 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 11
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6
Cochliobolus_victoriae_FI3_v1.0 7
Cochliobolus_carbonum_26-R-13_v1.0 7
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 8
Pyrenophora_teres_f._teres_22 8
Pyrenophora_tritici-repentis_ 5
Stagonospora_nodorum_ 6
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 5
Dothistroma_septosporum 8
Septoria_musiva_v1.0 5
Mycosphaerella_fijiensis_CIRAD86_ 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 9
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 5
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 9
Penicillium_chrysogenum_v1.0 6
Aspergillus_acidus_v1.0 7
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 8
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 9
Aspergillus_versicolor_v1.0 17
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 9
Aspergillus_tubingensis_v1.0 6
Aspergillus_wentii_v1.0 9
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 7
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 5
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 7
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 6
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 3
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 10
Pichia_stipitis_CBS_6054_ 4
Candida_guilliermondii_ATCC_6260_ 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 6
Debaromyces_hansenii 6
Wickerhamomyces_anomalus 7
Pichia_pastoris_GS115_ 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6
Yarrowia_lipolytica_CLIB122 8
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 10
Candida_glabrata_CBS138 12
Kluyveromyces_thermotolerans_CBS_6340 6
Lachancea_kluyveri_ 11
Kluyveromyces_waltii 6
Ashbya_gossypii_ATCC_10895_ 10
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 7
Saccharomyces_paradoxus_MIT 8
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 10
Kluyveromyces_lactis 7
Schizosaccharomyces_cryophilus_OY26_22 4
Schizosaccharomyces_octosporus_yFS286_ 4
Schizosaccharomyces_japonicus_yFS275_ 4
Schizosaccharomyces_pombe   (Fission yeast)   4
Catenaria_anguillulae_PL171_v1.0 4
Allomyces_macrogynus_ATCC_38327_ 2
Spizellomyces_punctatus_DAOM_BR117_ 11
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 12
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 4
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   8
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   4
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   6
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   9
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   8
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   5
Vitis_vinifera_   (Wine grape)   6
Mimulus_guttatus_v140   (Spotted monkey flower)   5
Solanum_lycopersicum_v.2.3   (Tomato)   4
Solanum_tuberosum_   (Potato)   14
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 7
Triticum_urartu_22 19
Triticum_aestivum_22   (Bread wheat)   26
Aegilops_tauschii_22 17
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   6
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 4
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11
Oryza_sativa_v193   (Rice)   11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   13
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   14
Zea_mays_v181   (Maize)   17
Sorghum_bicolor_   (Sorghum)   11
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   5
Amborella_trichopoda_22 7
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 12
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 12
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 7
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 6
Paramecium_tetraurelia_ 15
Tetrahymena_thermophila_SB210_1_ 2
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 0
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 1
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 3
Babela_massiliensis 0
Pantoea_sp._At-9b 0
Pseudomonas_sp._UW4 0
Ignisphaera_aggregans_DSM_17230 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   11
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 4
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 5
Saccharomyces_cerevisiae_PW5 7
Saccharomyces_cerevisiae_FL100 6
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 6
Saccharomyces_cerevisiae_CBS7960 7
Saccharomyces_cerevisiae_YJM269 7
Saccharomyces_cerevisiae_T7 7
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 7
Saccharomyces_cerevisiae_VL3 8
Saccharomyces_cerevisiae_Vin13 6
Saccharomyces_cerevisiae_LalvinQA23 7
Saccharomyces_cerevisiae_AWRI796 7
Saccharomyces_cerevisiae_Sigma1278b 7
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 7
Saccharomyces_cerevisiae_AWRI1631 8
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 6
Saccharomyces_cerevisiae_T73 5
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 7
Saccharomyces_cerevisiae_RM11-1a 7
Saccharomyces_cerevisiae_RM11-1a_ 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 4
Batrachochytrium_dendrobatidis_JEL423_ 10
Batrachochytrium_dendrobatidis_JAM81_ 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   20
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.14.25 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   10
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   12
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   11
Sus_scrofa_69_10.2   (Pig)   13
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   9
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   8
Sorex_araneus_69_1   (European shrew)   7
Erinaceus_europaeus_69   (Western European hedgehog)   13
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_69_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   14
Petromyzon_marinus_69_7.0   (Sea lamprey)   11
Meleagris_gallopavo_69_2   (Turkey)   5
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   7
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14
Oryzias_latipes_69_1   (Japanese medaka)   22
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   95
Homo_sapiens__(NCBI_version)   (Human)   11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Heliconius_numata__(Incomplete) 14
Loa_loa_v3.3_(Request)   (Eye worm)   46
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   15
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   19
Moniliophthora_perniciosa_FA553__(Genome_survey) 6
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 14
Malus_x_domestica_(Duplicate)   (Apple)   9
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 0
Uniprot_2018_03_genome 48516
Core_Eukaryotic_Genes_458_(CEGMA) 0
NCBI_2017_08_genome 7031
PDB_chains_(SCOP_1.75)_(PDB) 1
TargetDB__(Targets) 31
UniProt__viral_sequences_(Viral) 11
Protein_Data_Bank_(all_PDB_sequenc) 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4
Protozoadb_2010_08_(Protozoadb) 28
NCBI_viral_sequences_(Viral) 14
STRING_v9.0.5_(STRING) 792

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]