Domain combinations for _gap_,57716,117018,56091,50249,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57716 - Glucocorticoid receptor-like (DNA-binding domain)
117018 - ATP-dependent DNA ligase DNA-binding domain
56091 - DNA ligase/mRNA capping enzyme, catalytic domain
50249 - Nucleic acid-binding proteins

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Strains

Genome		Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	2

Longest transcript per gene

Genome		Number
Homo_sapiens_69_37	(Human)	0
Pan_troglodytes_69_2.1.4	(Chimpanzee)	0
Gorilla_gorilla_69_3.1	(Western gorilla)	0
Pongo_abelii_69_2	(Sumatran orangutan)	0
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	0
Macaca_mulatta_69_1	(Rhesus monkey)	0
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	0
Otolemur_garnettii_69_3	(Small-eared galago)	0
Microcebus_murinus_69_1	(Gray mouse lemur)	0
Rattus_norvegicus_69_3.4	(Norway rat)	0
Mus_musculus_69_38	(House mouse)	0
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	0
Cavia_porcellus_69_3	(Domestic guinea pig)	0
Oryctolagus_cuniculus_69_2	(Rabbit)	0
Ochotona_princeps_69	(American pika)	0
Tupaia_belangeri_69	(Northern tree shrew)	0
Bos_taurus_69_3.1	(Cattle)	1
Vicugna_pacos_69_1	(Alpaca)	0
Tursiops_truncatus_69_1	(Bottlenose dolphin)	0
Mustela_putorius_furo_69_1.0	(Domestic ferret)	1
Ailuropoda_melanoleuca_69_1	(Giant panda)	0
Equus_caballus_69_2	(Horse)	0
Myotis_lucifugus_69_2.0	(Little brown bat)	0
Pteropus_vampyrus_69_1	(Large flying fox)	0
Sorex_araneus_69_1	(European shrew)	0
Procavia_capensis_69_1	(Cape rock hyrax)	0
Loxodonta_africana_69_3	(African savanna elephant)	0
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	0
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	0
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	1
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	0
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	0
Gadus_morhua_69_1	(Atlantic cod)	0
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	0
Takifugu_rubripes_69_4	(Torafugu)	0
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	0
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	0
Oreochromis_niloticus_69_1.0	(Nile tilapia)	0
Ciona_intestinalis_69	(Vase tunicate)	1

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Others

Genome		Number
Homo_sapiens_75_37_(old_version_GRC)	(Human)	1
Homo_sapiens__(NCBI_version)	(Human)	1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	0
STRING_v9.0.5_(STRING)		1
Uniprot_2018_03_genome		1020
NCBI_2017_08_genome		108

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