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  Home > SCOP hierarchy > Domain combination - _gap_,57716,_gap_

Domain combinations for _gap_,57716,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57716 - Glucocorticoid receptor-like (DNA-binding domain)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   39
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   8
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8
Papio_anubis_76   (Olive baboon)   9
Macaca_mulatta_76_1   (Rhesus monkey)   21
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   28
Otolemur_garnettii_76_3   (Small-eared galago)   4
Microcebus_murinus_76_1   (Gray mouse lemur)   7
Rattus_norvegicus_76_5.0   (Norway rat)   7
Mus_musculus_76_38   (House mouse)   20
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   9
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   9
Tupaia_belangeri_76   (Northern tree shrew)   6
Sus_scrofa_76_10.2   (Pig)   9
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   13
Felis_catus_76_6.2   (Domestic cat)   8
Equus_caballus_76_2   (Horse)   9
Myotis_lucifugus_76_2.0   (Little brown bat)   14
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   10
Echinops_telfairi_76   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   5
Saccoglossus_kowalevskii_v3.0 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   6
Anas_platyrhynchos_76_1.0   (Mallard)   5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_76_1   (Coelacanth)   8
Lepisosteus_oculatus_76   (Spotted gar)   4
Gadus_morhua_76_1   (Atlantic cod)   6
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   16
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10
Astyanax_mexicanus_76   (Mexican tetra)   10
Danio_rerio_76_9   (Zebrafish)   25
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 53
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 7
Capitella_sp._I_ 24
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   10
Bombyx_mori_   (Domestic silkworm)   10
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 6
Drosophila_persimilis_1.3 9
Drosophila_suzukii 4
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 7
Drosophila_sechellia_1.3 5
Drosophila_melanogaster_76_5   (Fruit fly)   11
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   16
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   21
Anopheles_darlingi_22   (American malaria mosquito)   11
Anopheles_gambiae_49_3j   (African malaria mosquito)   5
Tribolium_castaneum_3.0   (Red flour beetle)   7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   7
Strigamia_maritima_22 6
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 17
Meloidogyne_incognita_   (Southern root-knot nematode)   51
Meloidogyne_hapla_ 14
Onchocerca_volvulus_22 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   11
Caenorhabditis_japonica_ 11
Caenorhabditis_brenneri_ 35
Caenorhabditis_remanei_ 19
Caenorhabditis_elegans_76_235   (Roundworm)   21
Caenorhabditis_briggsae_2 14
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 6
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 8
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 7
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 8
Mortierella_verticillata_NRRL_6337_ 10
Phycomyces_blakesleeanus_ 13
Rhizopus_oryzae_RA_99-880_ 14
Mucor_circinelloides_ 7
Rhizomucor_miehei_CAU432_ 15
Malassezia_globosa_CBS_7966_ 14
Sporisorium_reilianum_22 7
Ustilago_maydis_ 7
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 4
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 6
Piloderma_croceum_F_1598_v1.0 5
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 5
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 8
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   5
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 6
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 7
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 6
Heterobasidion_annosum_ 6
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 5
Sebacina_vermifera_MAFF_305830_v1.0 6
Fomitiporia_mediterranea_v1.0 5
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 5
Wolfiporia_cocos_MD-104_SS10__v1.0 6
Fomitopsis_pinicolav1.0 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5
Phanerochaete_chrysosporium_RP-78_2.1 6
Dichomitus_squalens 7
Trametes_versicolor_v1.0 5
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 5
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 5
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 4
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 4
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 5
Dothistroma_septosporum 5
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 6
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5
Hansenula_polymorpha_v2.0 5
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 7
Candida_tropicalis_MYA-3404_ 7
Candida_parapsilosis_ 7
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 7
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 5
Candida_guilliermondii_ATCC_6260_ 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 7
Wickerhamomyces_anomalus 3
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 5
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 6
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 8
Allomyces_macrogynus_ATCC_38327_ 16
Spizellomyces_punctatus_DAOM_BR117_ 10
Dictyostelium_discoideum 10
Dictyostelium_purpureum_ 9
Entamoeba_dispar_1.2 0
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 5
Pinus_taeda   (Loblolly pine)   9
Picea_abies   (Norway spruce)   8
Eucalyptus_grandis_v201   (Rose gum)   20
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12
Gossypium_raimondii_v221 39
Citrus_clementina_v165 19
Citrus_sinensis_v154   (Sweet orange)   25
Thellungiella_halophila_v173 15
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   29
Capsella_rubella_v183 13
Arabidopsis_lyrata_   (Lyrate rockcress)   14
Arabidopsis_thaliana_10   (Thale cress)   23
Carica_papaya_   (Papaya)   13
Medicago_truncatula_   (Barrel medic)   22
Phaseolus_vulgaris_v186   (French bean)   17
Glycine_max_v109   (Soybean)   32
Cucumis_sativus_v122   (Cucumber)   20
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   13
Linum_usitatissimum_v200   (Flax)   13
Manihot_esculenta_v147   (Cassava)   17
Populus_trichocarpa_v156   (Black cottonwood)   18
Vitis_vinifera_   (Wine grape)   14
Mimulus_guttatus_v140   (Spotted monkey flower)   12
Solanum_lycopersicum_v.2.3   (Tomato)   16
Solanum_tuberosum_   (Potato)   25
Actinidia_chinensis_Hongyang_ 17
Aquilegia_coerulea_v195 29
Triticum_urartu_22 12
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   19
Oryza_barthii_22   (African wild rice)   12
Oryza_meridionalis_22 15
Oryza_glumaepatula_22 14
Oryza_glaberrima   (African rice)   11
Oryza_punctata_22 18
Oryza_nivara_22 16
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17
Oryza_sativa_v193   (Rice)   15
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18
Panicum_virgatum_v202   (Switchgrass)   26
Setaria_italica_v164   (Foxtail millet)   14
Zea_mays_subsp._mays_   (Maize)   16
Zea_mays_v181   (Maize)   17
Sorghum_bicolor_   (Sorghum)   13
Musa_balbisiana   (Balbis banana)   30
Musa_acuminata_22   (Wild Malaysian banana)   25
Amborella_trichopoda_22 8
Physcomitrella_patens 5
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 4
Chlamydomonas_reinhardtii_4.0 6
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 4
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 5
Micromonas_pusilla_CCMP1545_v3.0 7
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 0
Cyanophora_paradoxa_ 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Aureococcus_anophagefferens_ 4
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Fragilariopsis_cylindrus 2
Perkinsus_marinus_ATCC_50983_ 2
Tetrahymena_thermophila_SB210_1_ 3
Cryptosporidium_muris 1
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 5
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 4

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   10
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   15
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   16
Cryptococcus_neoformans_var._grubii_H99_ 7
Cryptococcus_neoformans_B-3501A_ 7
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 4
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 4
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   10
Hordeum_vulgare_22   (Domesticated barley)   18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   19
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_69_3.1   (Western gorilla)   6
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   7
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   6
Ochotona_princeps_69   (American pika)   9
Tupaia_belangeri_69   (Northern tree shrew)   6
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   14
Pteropus_vampyrus_69_1   (Large flying fox)   8
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   5
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10
Danio_rerio_69_9   (Zebrafish)   12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   18

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   46
Homo_sapiens__(NCBI_version)   (Human)   14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Lotus_japonicus__(Early_assembly) 8
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   9
Nicotiana_benthamiana_0.4.4_(Early_draft) 23
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   16
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   16
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
Uniprot_2018_03_genome 48640
NCBI_2017_08_genome 8359
TargetDB__(Targets) 18
Protozoadb_2010_08_(Protozoadb) 18
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
STRING_v9.0.5_(STRING) 672

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.