SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,50630,53098,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases
53098 - Ribonuclease H-like
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Caenorhabditis_japonica_ 2
Glycine_max_v109   (Soybean)   1

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0

Longest transcript per gene
Genome     Number
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 75
NCBI_2017_08_genome 4

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