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Domain combinations for _gap_,57756,50630,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Bos_taurus_76_3.1   (Cattle)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   0
Anolis_carolinensis_76_2.0   (Green anole)   12
Latimeria_chalumnae_76_1   (Coelacanth)   2
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Helobdella_robusta_ 1
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Tribolium_castaneum_3.0   (Red flour beetle)   4
Acyrthosiphon_pisum_   (Pea aphid)   2
Strigamia_maritima_22 2
Pristionchus_pacificus_ 5
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 1
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 2
Mnemiopsis_leidyi   (Sea walnut)   3
Thelohanellus_kitauei 20
Acropora_digitifera_v1.0 1
Hydra_vulgaris 1
Amphimedon_queenslandica 2
Rhizopus_oryzae_RA_99-880_ 1
Sporobolomyces_roseus_IAM_13481_ 2
Pisolithus_microcarpus_441_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 0
Tremella_mesenterica_   (Witches' butter)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Yarrowia_lipolytica_CLIB122 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Thellungiella_halophila_v173 2
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   1
Prunus_persica_v139   (Peach)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   70
Oryza_sativa_v193   (Rice)   71
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 2
Perkinsus_marinus_ATCC_50983_ 4

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   9
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Bos_taurus_69_3.1   (Cattle)   1
Canis_familiaris_69_3.1   (Dog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Danio_rerio_69_9   (Zebrafish)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Others
Genome     Number
Homo_sapiens__(NCBI_version)   (Human)   3
UniProt__viral_sequences_(Viral) 1
NCBI_viral_sequences_(Viral) 1
STRING_v9.0.5_(STRING) 98
NCBI_2017_08_genome 668
Uniprot_2018_03_genome 6390

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