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  Home > SCOP hierarchy > Domain combination - _gap_,57850

Domain combinations for _gap_,57850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   145
Pan_troglodytes_76_2.1.4   (Chimpanzee)   46
Gorilla_gorilla_76_3.1   (Western gorilla)   57
Pongo_abelii_76_2   (Sumatran orangutan)   51
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   51
Papio_anubis_76   (Olive baboon)   54
Macaca_mulatta_76_1   (Rhesus monkey)   76
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   89
Otolemur_garnettii_76_3   (Small-eared galago)   54
Microcebus_murinus_76_1   (Gray mouse lemur)   32
Rattus_norvegicus_76_5.0   (Norway rat)   56
Mus_musculus_76_38   (House mouse)   122
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   34
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   52
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   50
Cavia_porcellus_76_3   (Domestic guinea pig)   53
Oryctolagus_cuniculus_76_2   (Rabbit)   50
Ochotona_princeps_76   (American pika)   36
Tupaia_belangeri_76   (Northern tree shrew)   33
Sus_scrofa_76_10.2   (Pig)   52
Bos_taurus_76_3.1   (Cattle)   51
Ovis_aries_76_3.1   (Sheep)   48
Vicugna_pacos_76_1   (Alpaca)   24
Tursiops_truncatus_76_1   (Bottlenose dolphin)   46
Mustela_putorius_furo_76_1.0   (Domestic ferret)   48
Ailuropoda_melanoleuca_76_1   (Giant panda)   53
Canis_familiaris_76_3.1   (Dog)   56
Felis_catus_76_6.2   (Domestic cat)   47
Equus_caballus_76_2   (Horse)   50
Myotis_lucifugus_76_2.0   (Little brown bat)   48
Pteropus_vampyrus_76_1   (Large flying fox)   39
Sorex_araneus_76_1   (European shrew)   35
Erinaceus_europaeus_76   (Western European hedgehog)   29
Procavia_capensis_76_1   (Cape rock hyrax)   33
Loxodonta_africana_76_3   (African savanna elephant)   59
Echinops_telfairi_76   (Small Madagascar hedgehog)   39
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   61
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   26
Macropus_eugenii_76_1.0   (Tammar wallaby)   41
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   46
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   51
Ornithorhynchus_anatinus_76_5   (Platypus)   31
Saccoglossus_kowalevskii_v3.0 58
Petromyzon_marinus_76_7.0   (Sea lamprey)   16
Meleagris_gallopavo_76_2   (Turkey)   39
Gallus_gallus_76_4   (Chicken)   44
Anas_platyrhynchos_76_1.0   (Mallard)   36
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   49
Ficedula_albicollis_76_1.0   (Collared flycatcher)   40
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   44
Anolis_carolinensis_76_2.0   (Green anole)   37
Xenopus_laevis_   (African clawed frog)   101
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   45
Latimeria_chalumnae_76_1   (Coelacanth)   57
Lepisosteus_oculatus_76   (Spotted gar)   51
Gadus_morhua_76_1   (Atlantic cod)   61
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   53
Takifugu_rubripes_76_4   (Torafugu)   92
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   70
Oryzias_latipes_76_1   (Japanese medaka)   60
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   58
Poecilia_formosa_76   (Amazon molly)   59
Oreochromis_niloticus_76_1.0   (Nile tilapia)   69
Astyanax_mexicanus_76   (Mexican tetra)   52
Danio_rerio_76_9   (Zebrafish)   89
Oikopleura_dioica 77
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   34
Ciona_intestinalis_76   (Vase tunicate)   32
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   52
Adineta_vaga 116
Octopus_bimaculoides_280 46
Crassostrea_gigas_22   (Pacific oyster)   42
Lottia_gigantea_   (Owl limpet)   34
Helobdella_robusta_ 51
Capitella_sp._I_ 44
Danaus_plexippus_OGS1.0   (Monarch butterfly)   22
Heliconius_melpomene_   (Postman butterfly)   19
Bombyx_mori_   (Domestic silkworm)   17
Nasonia_vitripennis_   (Jewel wasp)   17
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   32
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   23
Linepithema_humile_v1.1   (Argentine ant)   20
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   17
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21
Atta_cephalotes_v1.1 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23
Lucilia_cuprina   (Australian sheep blowfly)   17
Drosophila_grimshawi_1.3 27
Drosophila_willistoni_1.3 22
Drosophila_pseudoobscura_2.13 41
Drosophila_persimilis_1.3 38
Drosophila_suzukii 24
Drosophila_yakuba_1.3 29
Drosophila_simulans_1.3 21
Drosophila_sechellia_1.3 25
Drosophila_melanogaster_76_5   (Fruit fly)   45
Drosophila_erecta_1.3 29
Drosophila_ananassae_1.3 31
Drosophila_virilis_1.2 28
Drosophila_mojavensis_1.3 27
Megaselia_scalaris_22 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   31
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   28
Anopheles_darlingi_22   (American malaria mosquito)   13
Anopheles_gambiae_49_3j   (African malaria mosquito)   23
Tribolium_castaneum_3.0   (Red flour beetle)   28
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19
Acyrthosiphon_pisum_   (Pea aphid)   16
Rhodnius_prolixus_22 27
Daphnia_pulex_   (Common water flea)   39
Strigamia_maritima_22 34
Sarcoptes_scabiei 13
Tetranychus_urticae_   (Two-spotted spider mite)   20
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   23
Pristionchus_pacificus_ 51
Meloidogyne_incognita_   (Southern root-knot nematode)   64
Meloidogyne_hapla_ 19
Onchocerca_volvulus_22 20
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   22
Caenorhabditis_japonica_ 21
Caenorhabditis_brenneri_ 141
Caenorhabditis_remanei_ 145
Caenorhabditis_elegans_76_235   (Roundworm)   61
Caenorhabditis_briggsae_2 62
Trichinella_spiralis_22 16
Hymenolepis_microstoma_ 10
Echinococcus_multilocularis_ 10
Echinococcus_granulosus_ 10
Taenia_solium_   (Pork tapeworm)   12
Schistosoma_mansoni_ 14
Mnemiopsis_leidyi   (Sea walnut)   21
Thelohanellus_kitauei 8
Acropora_digitifera_v1.0 24
Nematostella_vectensis_1.0   (Starlet sea anemone)   34
Hydra_vulgaris 23
Amphimedon_queenslandica 37
Trichoplax_adhaerens_ 20
Proterospongia_sp._ATCC_50818_ 19
Monosiga_brevicollis_ 15
Sphaeroforma_arctica_JP610_ 27
Capsaspora_owczarzaki_ATCC_30864_ 23
Conidiobolus_coronatus_NRRL28638_v1.0 15
Mortierella_verticillata_NRRL_6337_ 26
Phycomyces_blakesleeanus_ 19
Rhizopus_oryzae_RA_99-880_ 11
Mucor_circinelloides_ 19
Rhizomucor_miehei_CAU432_ 16
Malassezia_globosa_CBS_7966_ 12
Sporisorium_reilianum_22 12
Ustilago_maydis_ 10
Mixia_osmundae_IAM_14324_v1.0 10
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 36
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 73
Melampsora_laricis-populina_ 39
Rhodotorula_graminis_WP1_v1.0 10
Sporobolomyces_roseus_IAM_13481_ 6
Microbotryum_violaceum_22 15
Wallemia_sebi_v1.0 8
Sphaerobolus_stellatus_v1.0 21
Piloderma_croceum_F_1598_v1.0 18
Serpula_lacrymans_var._lacrymans_S7.9_ 11
Coniophora_puteana 16
Hydnomerulius_pinastri_v2.0 17
Paxillus_rubicundulus_Ve08.2h10_v1.0 18
Pisolithus_microcarpus_441_v1.0 12
Pisolithus_tinctorius_Marx_270_v1.0 23
Scleroderma_citrinum_Foug_A_v1.0 16
Coprinopsis_cinerea_okayama7_130_v3 9
Pleurotus_ostreatus_   (Oyster mushroom)   17
Amanita_thiersii_Skay4041_v1.0 12
Amanita_muscaria_Koide_v1.0   (Fly agaric)   19
Galerina_marginata_v1.0 11
Hebeloma_cylindrosporum_h7_v2.0 14
Laccaria_bicolor_S238N-H82_ 20
Agaricus_bisporus_var._bisporus_ 10
Schizophyllum_commune_ 17
Stereum_hirsutum_FP-91666_SS1__v1.0 15
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 12
Punctularia_strigosozonata_v1.0 18
Sebacina_vermifera_MAFF_305830_v1.0 18
Fomitiporia_mediterranea_v1.0 16
Tulasnella_calospora_AL13/4D_v1.0 16
Postia_placenta_ 11
Wolfiporia_cocos_MD-104_SS10__v1.0 14
Fomitopsis_pinicolav1.0 15
Fomitopsis_pinicola_FP-58527_SS1_v3.0 14
Phanerochaete_chrysosporium_RP-78_2.1 8
Dichomitus_squalens 18
Trametes_versicolor_v1.0 17
Tremella_mesenterica_   (Witches' butter)   14
Daldinia_eschscholzii_EC12_v1.0 10
Apiospora_montagnei_NRRL_25634_v1.0 11
Magnaporthe_poae_ATCC_64411_22 13
Magnaporthe_grisea_70-15_ 8
Podospora_anserina_ 11
Sporotrichum_thermophile_ATCC_42464_ 7
Thielavia_terrestris_NRRL_8126_ 10
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 9
Neurospora_discreta_FGSC_8579_ 11
Neurospora_crassa_OR74A_ 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   11
Verticillium_albo-atrum_VaMs.102_ 13
Verticillium_dahliae_VdLs.17_ 11
Acremonium_alcalophilumv_1.0 10
Glomerella_graminicola_22 12
Fusarium_graminearum_ 12
Nectria_haematococca_mpVI_ 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 9
Fusarium_verticillioides_7600_ 10
Trichoderma_asperellum_CBS_433.97_v1.0 12
Trichoderma_atroviride_ 9
Trichoderma_citrinoviride_v1.0 9
Trichoderma_reesei_1.2 14
Trichoderma_virens_Gv29-8_ 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 11
Trichoderma_harzianum_CBS_226.95_v1.0 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   9
Botrytis_cinerea_B05.10_ 15
Sclerotinia_sclerotiorum_ 10
Blumeria_graminis_22 11
Didymella_exigua_CBS_183.55_v1.0 14
Leptosphaeria_maculans_22 11
Setosphaeria_turcica_v1.0 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 15
Cochliobolus_victoriae_FI3_v1.0 16
Cochliobolus_carbonum_26-R-13_v1.0 15
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   15
Alternaria_brassicicola_ 10
Cochliobolus_lunatus_m118_v2.0 12
Pyrenophora_teres_f._teres_22 12
Pyrenophora_tritici-repentis_ 13
Stagonospora_nodorum_ 15
Mycosphaerella_graminicola_IPO323_ 21
Zasmidium_cellare_ATCC_36951_v1.0 27
Dothistroma_septosporum 20
Septoria_musiva_v1.0 19
Mycosphaerella_fijiensis_CIRAD86_ 16
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 12
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 13
Coccidioides_immitis_RS_ 11
Ajellomyces_dermatitidis_SLH14081_ 10
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 9
Microsporum_canis_CBS_113480_ 10
Trichophyton_equinum_CBS_127.97_ 10
Trichophyton_verrucosum_HKI_0517_ 8
Arthroderma_benhamiae_CBS_112371_ 8
Trichophyton_tonsurans_CBS_112818_ 10
Trichophyton_rubrum_CBS_118892_ 13
Uncinocarpus_reesii_1704_ 9
Aspergillus_zonatus_v1.0 17
Penicillium_chrysogenum_Wisconsin_54-1255_ 17
Penicillium_chrysogenum_v1.0 17
Aspergillus_acidus_v1.0 14
Aspergillus_fumigatus_Af293 14
Aspergillus_brasiliensis_v1.0 16
Aspergillus_nidulans_FGSC_A4_ 15
Aspergillus_sydowii_v1.0 18
Aspergillus_versicolor_v1.0 17
Aspergillus_glaucus 13
Aspergillus_carbonarius_ITEM_5010_ 15
Neosartorya_fischeri_NRRL_181_ 13
Aspergillus_terreus_NIH2624_ 10
Aspergillus_tubingensis_v1.0 15
Aspergillus_wentii_v1.0 17
Aspergillus_oryzae_RIB40_ 15
Aspergillus_niger_22 11
Aspergillus_niger_ATCC_1015_ 10
Aspergillus_flavus_NRRL3357_ 12
Aspergillus_clavatus_NRRL_1_ 14
Penicillium_marneffei_ATCC_18224_ 13
Tuber_melanosporum_Mel28_22 9
Tuber_melanosporum_Vittad_   (Perigord truffle)   9
Hansenula_polymorpha_v2.0 8
Dekkera_bruxellensis_CBS_2499_v2.0 10
Pichia_membranifaciensv1.0 10
Candida_tanzawaensis_NRRL_Y-17324__v1.0 11
Candida_dubliniensis_CD36_ 8
Candida_tropicalis_MYA-3404_ 7
Candida_parapsilosis_ 8
Candida_albicans_SC5314 8
Lodderomyces_elongisporus_NRRL_YB-4239_ 8
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11
Pichia_stipitis_CBS_6054_ 8
Candida_guilliermondii_ATCC_6260_ 9
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 9
Debaromyces_hansenii 8
Wickerhamomyces_anomalus 18
Pichia_pastoris_GS115_ 12
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 12
Yarrowia_lipolytica_CLIB122 13
Candida_lusitaniae_ATCC_42720_ 10
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 11
Vanderwaltozyma_polyspora_DSM_70294_ 8
Candida_glabrata_CBS138 11
Kluyveromyces_thermotolerans_CBS_6340 10
Lachancea_kluyveri_ 10
Kluyveromyces_waltii 8
Ashbya_gossypii_ATCC_10895_ 10
Zygosaccharomyces_rouxii_ 9
Saccharomyces_mikatae_MIT 10
Saccharomyces_paradoxus_MIT 8
Saccharomyces_cerevisiae_76   (Baker's yeast)   9
Saccharomyces_bayanus_MIT 9
Kluyveromyces_lactis 10
Schizosaccharomyces_cryophilus_OY26_22 15
Schizosaccharomyces_octosporus_yFS286_ 16
Schizosaccharomyces_japonicus_yFS275_ 16
Schizosaccharomyces_pombe   (Fission yeast)   14
Catenaria_anguillulae_PL171_v1.0 21
Allomyces_macrogynus_ATCC_38327_ 42
Spizellomyces_punctatus_DAOM_BR117_ 12
Dictyostelium_discoideum 28
Dictyostelium_purpureum_ 63
Entamoeba_dispar_1.2 27
Entamoeba_invadens_1.2 20
Entamoeba_histolytica_1 24
Selaginella_moellendorffii_ 96
Pinus_taeda   (Loblolly pine)   128
Picea_abies   (Norway spruce)   118
Eucalyptus_grandis_v201   (Rose gum)   211
Theobroma_cacao_B97-61/B2_v1   (Cacao)   167
Gossypium_raimondii_v221 486
Citrus_clementina_v165 190
Citrus_sinensis_v154   (Sweet orange)   235
Thellungiella_halophila_v173 190
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   277
Capsella_rubella_v183 203
Arabidopsis_lyrata_   (Lyrate rockcress)   209
Arabidopsis_thaliana_10   (Thale cress)   260
Carica_papaya_   (Papaya)   130
Medicago_truncatula_   (Barrel medic)   264
Phaseolus_vulgaris_v186   (French bean)   227
Glycine_max_v109   (Soybean)   328
Cucumis_sativus_v122   (Cucumber)   158
Fragaria_vesca_   (Wild strawberry)   170
Malus_domestica_v196   (Apple)   250
Prunus_persica_v139   (Peach)   165
Linum_usitatissimum_v200   (Flax)   225
Manihot_esculenta_v147   (Cassava)   222
Populus_trichocarpa_v156   (Black cottonwood)   250
Vitis_vinifera_   (Wine grape)   101
Mimulus_guttatus_v140   (Spotted monkey flower)   221
Solanum_lycopersicum_v.2.3   (Tomato)   191
Solanum_tuberosum_   (Potato)   272
Actinidia_chinensis_Hongyang_ 128
Aquilegia_coerulea_v195 186
Triticum_urartu_22 97
Triticum_aestivum_22   (Bread wheat)   325
Aegilops_tauschii_22 115
Brachypodium_distachyon_   (Stiff brome)   214
Oryza_barthii_22   (African wild rice)   164
Oryza_meridionalis_22 183
Oryza_glumaepatula_22 192
Oryza_glaberrima   (African rice)   158
Oryza_punctata_22 208
Oryza_nivara_22 236
Oryza_brachyantha_22   (Malo sina)   128
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   261
Oryza_sativa_v193   (Rice)   261
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   145
Panicum_virgatum_v202   (Switchgrass)   366
Setaria_italica_v164   (Foxtail millet)   217
Zea_mays_subsp._mays_   (Maize)   322
Zea_mays_v181   (Maize)   346
Sorghum_bicolor_   (Sorghum)   186
Musa_balbisiana   (Balbis banana)   160
Musa_acuminata_22   (Wild Malaysian banana)   189
Amborella_trichopoda_22 104
Physcomitrella_patens 64
Coccomyxa_subellipsoidea_sp._C-169_v2 30
Asterochloris_sp._Cgr/DA1pho_v1.0 17
Chlorella_variabilis_sp._NC64A_ 31
Chlorella_vulgaris_ 23
Volvox_carteri_f._nagariensis_ 20
Volvox_carteri_v199 20
Chlamydomonas_reinhardtii_4.0 31
Ostreococcus_sp._RCC809_ 18
Ostreococcus_lucimarinus_CCE9901_ 19
Ostreococcus_tauri_ 18
Bathycoccus_prasinos_ 17
Micromonas_sp._RCC299_ 29
Micromonas_pusilla_CCMP1545_v3.0 22
Cyanidioschyzon_merolae_strain_10D_22 14
Cyanidioschyzon_merolae 13
Porphyridium_purpureum_02_2012 26
Thecamonas_trahens_ATCC_50062_ 26
Bigelowiella_natans_CCMP2755_22 31
Giardia_lamblia_2.3 7
Cyanophora_paradoxa_ 44
Leishmania_mexicana_2.4 14
Leishmania_major_strain_Friedlin_ 15
Leishmania_infantum_JPCM5_2.4 15
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 15
Trypanosoma_vivax_ 9
Trypanosoma_cruzi_strain_CL_Brener 13
Trypanosoma_congolense_2.4 22
Trypanosoma_brucei_gambiense_v4.1 15
Trypanosoma_brucei_TREU927_v4.1 16
Ectocarpus_siliculosus 43
Aureococcus_anophagefferens_ 13
Albugo_laibachii_22 25
Pythium_iwayamai_DAOM_BR242034_22 33
Pythium_arrhenomanes_ATCC_12531_22 35
Pythium_ultimum_v1.7-2 28
Pythium_aphanidermatum_DAOM_BR444_22 31
Pythium_irregulare_DAOM_BR486_22 30
Pythium_vexans_DAOM_BR484_22 29
Phytophthora_ramorum_1.1   (Sudden oak death agent)   26
Phytophthora_sojae_1.1 34
Phytophthora_infestans_T30-4_ 32
Phytophthora_capsici_ 29
Hyaloperonospora_arabidopsidis_22 22
Phaeodactylum_tricornutumCCAP_1055/1 19
Fragilariopsis_cylindrus 49
Thalassiosira_pseudonana_CCMP1335 17
Perkinsus_marinus_ATCC_50983_ 72
Paramecium_tetraurelia_ 274
Tetrahymena_thermophila_SB210_1_ 68
Ichthyophthirius_multifiliis_strain_G5_ 8
Cryptosporidium_hominis 13
Cryptosporidium_muris 16
Cryptosporidium_parvum_Iowa_II 11
Neospora_caninum 15
Toxoplasma_gondii_VEG 14
Toxoplasma_gondii_ME49 18
Toxoplasma_gondii_GT1 10
Babesia_bovis_T2Bo_ 22
Theileria_parva__ 9
Theileria_annulata 11
Plasmodium_falciparum_3D7_ 15
Plasmodium_vivax_SaI-1_7.0 16
Plasmodium_knowlesi_strain_H_ 15
Plasmodium_yoelii_ssp._yoelii_1_ 12
Plasmodium_chabaudi_ 14
Plasmodium_berghei_ANKA_ 15
Symbiodinium_minutum_clade_B1_v1.2 114
Naegleria_gruberi_ 23
Trichomonas_vaginalis_ 59
Guillardia_theta_CCMP2712_v1.0_ 37
Emiliania_huxleyi_CCMP1516_ 197
Halothece_sp._PCC_7418 1
Candidatus_Phytoplasma_mali 0
Thermobispora_bispora_DSM_43833 0
Nakamurella_multipartita_DSM_44233 1
Modestobacter_marinus 1
Kineococcus_radiotolerans_SRS30216 1
Streptosporangium_roseum_DSM_43021 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 1
Verrucosispora_maris_AB-18-032 1
Tsukamurella_paurometabola_DSM_20162 1
Gordonia_sp._KTR9 1
Gordonia_bronchialis_DSM_43247 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 1
Candidatus_Amoebophilus_asiaticus_5a2 1
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfobulbus_propionicus_DSM_2032 0
Babela_massiliensis 1
Haliangium_ochraceum_DSM_14365 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Coxiella_burnetii_Dugway_5J108-111 0
Legionella_longbeachae_NSW150 1
Legionella_pneumophila_str._Corby 0
Candidatus_Caldiarchaeum_subterraneum 1
Methanothermococcus_okinawensis_IH1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   88
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   38
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   28
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   18
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   54
Cryptococcus_neoformans_var._grubii_H99_ 10
Cryptococcus_neoformans_B-3501A_ 10
Cryptococcus_neoformans_JEC21_ 8
Paracoccidioides_brasiliensis_Pb01_ 8
Paracoccidioides_brasiliensis_Pb03_ 8
Coccidioides_posadasii_str._Silveira_ 12
Coccidioides_immitis_RMSCC_3703_ 10
Coccidioides_immitis_RMSCC_2394_ 14
Coccidioides_immitis_H538.4_ 13
Ajellomyces_dermatitidis_ER-3_ 11
Histoplasma_capsulatum_H143 7
Histoplasma_capsulatum_H88 10
Histoplasma_capsulatum_G186AR 12
Aspergillus_fumigatus_A1163_ 15
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 7
Saccharomyces_cerevisiae_PW5 8
Saccharomyces_cerevisiae_FL100 5
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 6
Saccharomyces_cerevisiae_CBS7960 7
Saccharomyces_cerevisiae_YJM269 7
Saccharomyces_cerevisiae_T7 9
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 6
Saccharomyces_cerevisiae_VL3 7
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 9
Saccharomyces_cerevisiae_AWRI796 10
Saccharomyces_cerevisiae_Sigma1278b 9
Saccharomyces_cerevisiae_W303 10
Saccharomyces_cerevisiae_JAY291 9
Saccharomyces_cerevisiae_AWRI1631 8
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 5
Saccharomyces_cerevisiae_T73 7
Saccharomyces_cerevisiae_CLIB215 9
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 9
Saccharomyces_cerevisiae_YJM789 9
Saccharomyces_cerevisiae_RM11-1a 9
Saccharomyces_cerevisiae_RM11-1a_ 9
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   9
Schizosaccharomyces_pombe_972h-_ 14
Batrachochytrium_dendrobatidis_JEL423_ 17
Batrachochytrium_dendrobatidis_JAM81_ 19
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   159
Hordeum_vulgare_22   (Domesticated barley)   232
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   169
Trypanosoma_brucei_Lister_427_v4.1 16
Neospora_caninum_Nc-Liverpool_6.2 15
Plasmodium_falciparum_HB3_ 12
Plasmodium_falciparum_Dd2_ 9
Dactylococcopsis_salina_PCC_8305 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 0
Nocardia_brasiliensis_ATCC_700358 1
Myxococcus_stipitatus_DSM_14675 0
Coxiella_burnetii_CbuG_Q212 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   48
Pan_troglodytes_69_2.1.4   (Chimpanzee)   45
Gorilla_gorilla_69_3.1   (Western gorilla)   45
Pongo_abelii_69_2   (Sumatran orangutan)   46
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   44
Macaca_mulatta_69_1   (Rhesus monkey)   50
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   47
Otolemur_garnettii_69_3   (Small-eared galago)   51
Microcebus_murinus_69_1   (Gray mouse lemur)   32
Rattus_norvegicus_69_3.4   (Norway rat)   42
Mus_musculus_69_38   (House mouse)   48
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   34
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   50
Cavia_porcellus_69_3   (Domestic guinea pig)   51
Oryctolagus_cuniculus_69_2   (Rabbit)   48
Ochotona_princeps_69   (American pika)   36
Tupaia_belangeri_69   (Northern tree shrew)   33
Sus_scrofa_69_10.2   (Pig)   51
Bos_taurus_69_3.1   (Cattle)   50
Vicugna_pacos_69_1   (Alpaca)   24
Tursiops_truncatus_69_1   (Bottlenose dolphin)   46
Mustela_putorius_furo_69_1.0   (Domestic ferret)   48
Ailuropoda_melanoleuca_69_1   (Giant panda)   48
Canis_familiaris_69_3.1   (Dog)   46
Felis_catus_69   (Domestic cat)   29
Equus_caballus_69_2   (Horse)   46
Myotis_lucifugus_69_2.0   (Little brown bat)   48
Pteropus_vampyrus_69_1   (Large flying fox)   39
Sorex_araneus_69_1   (European shrew)   35
Erinaceus_europaeus_69   (Western European hedgehog)   29
Procavia_capensis_69_1   (Cape rock hyrax)   33
Loxodonta_africana_69_3   (African savanna elephant)   47
Echinops_telfairi_69   (Small Madagascar hedgehog)   39
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   33
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   26
Macropus_eugenii_69_1.0   (Tammar wallaby)   41
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   40
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   47
Ornithorhynchus_anatinus_69_5   (Platypus)   28
Petromyzon_marinus_69_7.0   (Sea lamprey)   15
Meleagris_gallopavo_69_2   (Turkey)   36
Gallus_gallus_69_2   (Chicken)   34
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   44
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_69_2.0   (Green anole)   38
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   37
Latimeria_chalumnae_69_1   (Coelacanth)   47
Gadus_morhua_69_1   (Atlantic cod)   53
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   50
Takifugu_rubripes_69_4   (Torafugu)   51
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   58
Oryzias_latipes_69_1   (Japanese medaka)   53
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   57
Oreochromis_niloticus_69_1.0   (Nile tilapia)   56
Danio_rerio_69_9   (Zebrafish)   62
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   21
Ciona_intestinalis_69   (Vase tunicate)   29
Drosophila_melanogaster_69_5   (Fruit fly)   27
Caenorhabditis_elegans_69_215   (Roundworm)   47
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   9
Arabidopsis_thaliana_10   (Thale cress)   198

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   157
Homo_sapiens__(NCBI_version)   (Human)   74
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   47
Heliconius_numata__(Incomplete) 8
Loa_loa_v3.3_(Request)   (Eye worm)   26
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   18
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   15
Moniliophthora_perniciosa_FA553__(Genome_survey) 10
Encephalitozoon_intestinalis__(endoparasite) 10
Encephalitozoon_cuniculi_(endoparasite) 12
Picea_sitchensis__(Incomplete)   (Sitka spruce)   19
Lotus_japonicus__(Early_assembly) 114
Malus_x_domestica_(Duplicate)   (Apple)   250
Ricinus_communis__(Early_assembly)   (Castor bean)   128
Nicotiana_benthamiana_0.4.4_(Early_draft) 251
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   185
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   191
Phoenix_dactylifera__(Early_draft)   (Date palm)   50
Guillardia_theta_(nucleomorph) 1
NCBI_viral_sequences_(Viral) 172
Protein_Data_Bank_(all_PDB_sequenc) 7
UniProt__viral_sequences_(Viral) 144
Protozoadb_2010_08_(Protozoadb) 600
STRING_v9.0.5_(STRING) 4581
NCBI_2017_08_genome 55061
Uniprot_2018_03_genome 162555
TargetDB__(Targets) 134

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.