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Domain combinations for _gap_,57850,57845,_gap_,81296,101898 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
57845 - B-box zinc-binding domain
81296 - E set domains
101898 - NHL repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Mus_musculus_76_38   (House mouse)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ovis_aries_76_3.1   (Sheep)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Strigamia_maritima_22 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Mus_musculus_69_38   (House mouse)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 1300
NCBI_2017_08_genome 158

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