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Domain combinations for _gap_,57850,_gap_,57845,_gap_,81296,101898 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
57845 - B-box zinc-binding domain
81296 - E set domains
101898 - NHL repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Canis_familiaris_76_3.1   (Dog)   1
Saccoglossus_kowalevskii_v3.0 1
Lepisosteus_oculatus_76   (Spotted gar)   1
Danio_rerio_76_9   (Zebrafish)   1
Strigamia_maritima_22 1
Onchocerca_volvulus_22 0
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Amphimedon_queenslandica 1

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Canis_familiaris_69_3.1   (Dog)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 1586
NCBI_2017_08_genome 76

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