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Domain combinations for _gap_,57863,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57863 - ArfGap/RecO-like zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Papio_anubis_76   (Olive baboon)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Ovis_aries_76_3.1   (Sheep)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   2
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 0
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Atta_cephalotes_v1.1 1
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Anopheles_darlingi_22   (American malaria mosquito)   0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Trichinella_spiralis_22 1
Taenia_solium_   (Pork tapeworm)   0
Acropora_digitifera_v1.0 1
Hydra_vulgaris 0
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 2
Postia_placenta_ 1
Daldinia_eschscholzii_EC12_v1.0 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Fusarium_graminearum_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 0
Leptosphaeria_maculans_22 1
Alternaria_brassicicola_ 1
Dothistroma_septosporum 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_fumigatus_Af293 0
Aspergillus_sydowii_v1.0 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Allomyces_macrogynus_ATCC_38327_ 2
Dictyostelium_discoideum 0
Entamoeba_dispar_1.2 0
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 2
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   2
Linum_usitatissimum_v200   (Flax)   0
Populus_trichocarpa_v156   (Black cottonwood)   2
Actinidia_chinensis_Hongyang_ 1
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   2
Oryza_glumaepatula_22 2
Oryza_punctata_22 1
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   1
Physcomitrella_patens 1
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 2
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 1
Tetrahymena_thermophila_SB210_1_ 2
Neospora_caninum 0
Symbiodinium_minutum_clade_B1_v1.2 6
Emiliania_huxleyi_CCMP1516_ 2

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Cryptococcus_neoformans_B-3501A_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Danio_rerio_69_9   (Zebrafish)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Malus_x_domestica_(Duplicate)   (Apple)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Protozoadb_2010_08_(Protozoadb) 14
STRING_v9.0.5_(STRING) 20
NCBI_2017_08_genome 182
Uniprot_2018_03_genome 1620
TargetDB__(Targets) 4

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