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Home > SCOP hierarchy > Domain combination - _gap_,57889,_gap_,54236,_gap_

Domain combinations for _gap_,57889,_gap_,54236,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57889 - Cysteine-rich domain
54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 2

Macaca_mulatta_76_1 (Rhesus monkey) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_76_3 (Small-eared galago) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 0

Erinaceus_europaeus_76 (Western European hedgehog) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 0

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Saccoglossus_kowalevskii_v3.0 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_76_1 (Coelacanth) 1

Lepisosteus_oculatus_76 (Spotted gar) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 2

Takifugu_rubripes_76_4 (Torafugu) 4

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 0

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 3

Oreochromis_niloticus_76_1.0 (Nile tilapia) 2

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 4

Crassostrea_gigas_22 (Pacific oyster) 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 3

Caenorhabditis_briggsae_2 1

Hymenolepis_microstoma_ 0

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Taenia_solium_ (Pork tapeworm) 1

Acropora_digitifera_v1.0 1

Trichoplax_adhaerens_ 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 1

Ascaris_suum_Victoria/Ghent_ (Pig roundworm) 1

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 2

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Canis_familiaris_69_3.1 (Dog) 1

Pteropus_vampyrus_69_1 (Large flying fox) 0

Erinaceus_europaeus_69 (Western European hedgehog) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_69_1 (Coelacanth) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 3

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 0

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 2

Caenorhabditis_elegans_69_215 (Roundworm) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 2

Homo_sapiens__(NCBI_version) (Human) 1

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Loa_loa_v3.3_(Request) (Eye worm) 1

STRING_v9.0.5_(STRING) 23

Uniprot_2018_03_genome 2275

NCBI_2017_08_genome 335

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Domain combinations for _gap_,57889,_gap_,54236,_gap_ superfamilies in groups of genomes