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  Home > SCOP hierarchy > Domain combination - _gap_,57903

Domain combinations for _gap_,57903 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57903 - FYVE/PHD zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   70
Pan_troglodytes_76_2.1.4   (Chimpanzee)   13
Gorilla_gorilla_76_3.1   (Western gorilla)   18
Pongo_abelii_76_2   (Sumatran orangutan)   12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   13
Macaca_mulatta_76_1   (Rhesus monkey)   21
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   32
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   9
Rattus_norvegicus_76_5.0   (Norway rat)   13
Mus_musculus_76_38   (House mouse)   38
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   14
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   15
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   17
Cavia_porcellus_76_3   (Domestic guinea pig)   14
Oryctolagus_cuniculus_76_2   (Rabbit)   16
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   7
Sus_scrofa_76_10.2   (Pig)   17
Bos_taurus_76_3.1   (Cattle)   13
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12
Mustela_putorius_furo_76_1.0   (Domestic ferret)   12
Ailuropoda_melanoleuca_76_1   (Giant panda)   12
Canis_familiaris_76_3.1   (Dog)   15
Felis_catus_76_6.2   (Domestic cat)   14
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   14
Pteropus_vampyrus_76_1   (Large flying fox)   12
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   16
Loxodonta_africana_76_3   (African savanna elephant)   20
Echinops_telfairi_76   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   21
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_76_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   17
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_76_5   (Platypus)   13
Saccoglossus_kowalevskii_v3.0 16
Petromyzon_marinus_76_7.0   (Sea lamprey)   7
Meleagris_gallopavo_76_2   (Turkey)   22
Gallus_gallus_76_4   (Chicken)   20
Anas_platyrhynchos_76_1.0   (Mallard)   14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   18
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   47
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   18
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   18
Takifugu_rubripes_76_4   (Torafugu)   27
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   11
Poecilia_formosa_76   (Amazon molly)   11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   13
Astyanax_mexicanus_76   (Mexican tetra)   18
Danio_rerio_76_9   (Zebrafish)   27
Oikopleura_dioica 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_76   (Vase tunicate)   12
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   18
Adineta_vaga 21
Octopus_bimaculoides_280 31
Crassostrea_gigas_22   (Pacific oyster)   14
Lottia_gigantea_   (Owl limpet)   16
Helobdella_robusta_ 31
Capitella_sp._I_ 32
Danaus_plexippus_OGS1.0   (Monarch butterfly)   10
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11
Linepithema_humile_v1.1   (Argentine ant)   7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7
Atta_cephalotes_v1.1 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 7
Drosophila_pseudoobscura_2.13 8
Drosophila_persimilis_1.3 8
Drosophila_suzukii 5
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 8
Drosophila_sechellia_1.3 7
Drosophila_melanogaster_76_5   (Fruit fly)   9
Drosophila_erecta_1.3 8
Drosophila_ananassae_1.3 9
Drosophila_virilis_1.2 6
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10
Anopheles_darlingi_22   (American malaria mosquito)   9
Anopheles_gambiae_49_3j   (African malaria mosquito)   8
Tribolium_castaneum_3.0   (Red flour beetle)   10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   17
Rhodnius_prolixus_22 9
Daphnia_pulex_   (Common water flea)   20
Strigamia_maritima_22 8
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 8
Meloidogyne_incognita_   (Southern root-knot nematode)   13
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 14
Caenorhabditis_remanei_ 19
Caenorhabditis_elegans_76_235   (Roundworm)   17
Caenorhabditis_briggsae_2 13
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 11
Echinococcus_granulosus_ 10
Taenia_solium_   (Pork tapeworm)   9
Schistosoma_mansoni_ 5
Mnemiopsis_leidyi   (Sea walnut)   8
Thelohanellus_kitauei 6
Acropora_digitifera_v1.0 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   14
Hydra_vulgaris 9
Amphimedon_queenslandica 37
Trichoplax_adhaerens_ 6
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 13
Capsaspora_owczarzaki_ATCC_30864_ 11
Conidiobolus_coronatus_NRRL28638_v1.0 6
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 11
Rhizopus_oryzae_RA_99-880_ 11
Mucor_circinelloides_ 12
Rhizomucor_miehei_CAU432_ 7
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 3
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 3
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 5
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 11
Hebeloma_cylindrosporum_h7_v2.0 6
Laccaria_bicolor_S238N-H82_ 15
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 6
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 3
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 5
Apiospora_montagnei_NRRL_25634_v1.0 4
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 5
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 3
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 5
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 5
Trichoderma_asperellum_CBS_433.97_v1.0 5
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 6
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 4
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 6
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 9
Septoria_musiva_v1.0 6
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 7
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 3
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 26
Pinus_taeda   (Loblolly pine)   18
Picea_abies   (Norway spruce)   11
Eucalyptus_grandis_v201   (Rose gum)   23
Theobroma_cacao_B97-61/B2_v1   (Cacao)   15
Gossypium_raimondii_v221 62
Citrus_clementina_v165 20
Citrus_sinensis_v154   (Sweet orange)   20
Thellungiella_halophila_v173 20
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   28
Capsella_rubella_v183 20
Arabidopsis_lyrata_   (Lyrate rockcress)   17
Arabidopsis_thaliana_10   (Thale cress)   27
Carica_papaya_   (Papaya)   17
Medicago_truncatula_   (Barrel medic)   26
Phaseolus_vulgaris_v186   (French bean)   23
Glycine_max_v109   (Soybean)   50
Cucumis_sativus_v122   (Cucumber)   23
Fragaria_vesca_   (Wild strawberry)   12
Malus_domestica_v196   (Apple)   22
Prunus_persica_v139   (Peach)   18
Linum_usitatissimum_v200   (Flax)   25
Manihot_esculenta_v147   (Cassava)   22
Populus_trichocarpa_v156   (Black cottonwood)   28
Vitis_vinifera_   (Wine grape)   15
Mimulus_guttatus_v140   (Spotted monkey flower)   24
Solanum_lycopersicum_v.2.3   (Tomato)   21
Solanum_tuberosum_   (Potato)   29
Actinidia_chinensis_Hongyang_ 24
Aquilegia_coerulea_v195 20
Triticum_urartu_22 10
Triticum_aestivum_22   (Bread wheat)   48
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   22
Oryza_barthii_22   (African wild rice)   24
Oryza_meridionalis_22 18
Oryza_glumaepatula_22 19
Oryza_glaberrima   (African rice)   16
Oryza_punctata_22 22
Oryza_nivara_22 21
Oryza_brachyantha_22   (Malo sina)   17
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   26
Oryza_sativa_v193   (Rice)   26
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   27
Panicum_virgatum_v202   (Switchgrass)   46
Setaria_italica_v164   (Foxtail millet)   25
Zea_mays_subsp._mays_   (Maize)   45
Zea_mays_v181   (Maize)   50
Sorghum_bicolor_   (Sorghum)   21
Musa_balbisiana   (Balbis banana)   21
Musa_acuminata_22   (Wild Malaysian banana)   31
Amborella_trichopoda_22 19
Physcomitrella_patens 17
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 6
Volvox_carteri_f._nagariensis_ 3
Volvox_carteri_v199 4
Chlamydomonas_reinhardtii_4.0 9
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 4
Micromonas_pusilla_CCMP1545_v3.0 5
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 6
Bigelowiella_natans_CCMP2755_22 3
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 5
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 3
Trypanosoma_brucei_TREU927_v4.1 3
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 10
Pythium_iwayamai_DAOM_BR242034_22 20
Pythium_arrhenomanes_ATCC_12531_22 12
Pythium_ultimum_v1.7-2 21
Pythium_aphanidermatum_DAOM_BR444_22 12
Pythium_irregulare_DAOM_BR486_22 18
Pythium_vexans_DAOM_BR484_22 15
Phytophthora_ramorum_1.1   (Sudden oak death agent)   18
Phytophthora_sojae_1.1 19
Phytophthora_infestans_T30-4_ 24
Phytophthora_capsici_ 23
Hyaloperonospora_arabidopsidis_22 11
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 6
Thalassiosira_pseudonana_CCMP1335 3
Perkinsus_marinus_ATCC_50983_ 3
Paramecium_tetraurelia_ 29
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 3
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 11
Acaryochloris_marina_MBIC11017 1
butyrate-producing_bacterium_SM4/1 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Thermofilum_pendens_Hrk_5 0
Methanosarcina_barkeri_str._Fusaro 0
Thermococcus_sp._4557 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   33
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   12
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 4
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 4
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 3
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 5
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   13
Hordeum_vulgare_22   (Domesticated barley)   39
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   15
Trypanosoma_brucei_Lister_427_v4.1 3
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Arthrospira_platensis_NIES-39 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 0
Myxococcus_stipitatus_DSM_14675 0
Pseudomonas_fluorescens_F113 1
Methanomethylovorans_hollandica_DSM_15978 0
Methanolobus_psychrophilus_R15 2
Thermococcus_sp._AM4 1
Thermococcus_sp._CL1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   13
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   12
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_69_3   (Small-eared galago)   14
Microcebus_murinus_69_1   (Gray mouse lemur)   9
Rattus_norvegicus_69_3.4   (Norway rat)   12
Mus_musculus_69_38   (House mouse)   13
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   14
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14
Cavia_porcellus_69_3   (Domestic guinea pig)   14
Oryctolagus_cuniculus_69_2   (Rabbit)   13
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   7
Sus_scrofa_69_10.2   (Pig)   14
Bos_taurus_69_3.1   (Cattle)   12
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12
Ailuropoda_melanoleuca_69_1   (Giant panda)   12
Canis_familiaris_69_3.1   (Dog)   14
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   12
Myotis_lucifugus_69_2.0   (Little brown bat)   14
Pteropus_vampyrus_69_1   (Large flying fox)   12
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   16
Loxodonta_africana_69_3   (African savanna elephant)   13
Echinops_telfairi_69   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_69_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   17
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_69_5   (Platypus)   12
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   19
Gallus_gallus_69_2   (Chicken)   17
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   18
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11
Latimeria_chalumnae_69_1   (Coelacanth)   11
Gadus_morhua_69_1   (Atlantic cod)   13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   15
Takifugu_rubripes_69_4   (Torafugu)   11
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11
Oryzias_latipes_69_1   (Japanese medaka)   12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   11
Oreochromis_niloticus_69_1.0   (Nile tilapia)   11
Danio_rerio_69_9   (Zebrafish)   17
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_69   (Vase tunicate)   12
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   17

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   85
Homo_sapiens__(NCBI_version)   (Human)   28
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   13
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   6
Lotus_japonicus__(Early_assembly) 14
Malus_x_domestica_(Duplicate)   (Apple)   22
Ricinus_communis__(Early_assembly)   (Castor bean)   14
Nicotiana_benthamiana_0.4.4_(Early_draft) 38
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   21
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   21
Phoenix_dactylifera__(Early_draft)   (Date palm)   14
NCBI_plasmid_sequences_(Plasmids) 0
UniProt__viral_sequences_(Viral) 1
TargetDB__(Targets) 38
PDB_chains_(SCOP_1.75)_(PDB) 1
Protein_Data_Bank_(all_PDB_sequenc) 17
Protozoadb_2010_08_(Protozoadb) 44
STRING_v9.0.5_(STRING) 947
Uniprot_2018_03_genome 36495
NCBI_viral_sequences_(Viral) 3
NCBI_2017_08_genome 10945
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.