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Home > SCOP hierarchy > Domain combination - _gap_,57903,82199,_gap_

Domain combinations for _gap_,57903,82199,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57903 - FYVE/PHD zinc finger
82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 7

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_76_3.1 (Western gorilla) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 2

Macaca_mulatta_76_1 (Rhesus monkey) 2

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 5

Otolemur_garnettii_76_3 (Small-eared galago) 1

Mus_musculus_76_38 (House mouse) 2

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 1

Vicugna_pacos_76_1 (Alpaca) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 1

Sorex_araneus_76_1 (European shrew) 1

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_76_5 (Platypus) 2

Saccoglossus_kowalevskii_v3.0 9

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 3

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Poecilia_formosa_76 (Amazon molly) 1

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 0

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 0

Drosophila_pseudoobscura_2.13 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Strigamia_maritima_22 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Pristionchus_pacificus_ 1

Meloidogyne_incognita_ (Southern root-knot nematode) 1

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 2

Caenorhabditis_elegans_76_235 (Roundworm) 2

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 1

Trichoplax_adhaerens_ 1

Monosiga_brevicollis_ 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Hebeloma_cylindrosporum_h7_v2.0 1

Laccaria_bicolor_S238N-H82_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Postia_placenta_ 0

Fomitopsis_pinicolav1.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 1

Trametes_versicolor_v1.0 1

Aspergillus_zonatus_v1.0 1

Hansenula_polymorpha_v2.0 1

Dekkera_bruxellensis_CBS_2499_v2.0 1

Pichia_membranifaciensv1.0 1

Candida_parapsilosis_ 1

Babjeviella_inositovora_NRRL_Y-12698_v1.0 1

Wickerhamomyces_anomalus 1

Pichia_pastoris_GS115_ 1

Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Vanderwaltozyma_polyspora_DSM_70294_ 2

Candida_glabrata_CBS138 1

Kluyveromyces_thermotolerans_CBS_6340 1

Lachancea_kluyveri_ 1

Kluyveromyces_waltii 1

Ashbya_gossypii_ATCC_10895_ 1

Zygosaccharomyces_rouxii_ 1

Saccharomyces_mikatae_MIT 2

Saccharomyces_paradoxus_MIT 1

Saccharomyces_cerevisiae_76 (Baker's yeast) 2

Kluyveromyces_lactis 1

Linum_usitatissimum_v200 (Flax) 0

Aegilops_tauschii_22 0

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 1

Aureococcus_anophagefferens_ 1

Pythium_vexans_DAOM_BR484_22 0

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 1

Sorex_araneus_69_1 (European shrew) 1

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_69_1 (Coelacanth) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Oreochromis_niloticus_69_1.0 (Nile tilapia) 1

Danio_rerio_69_9 (Zebrafish) 1

Caenorhabditis_elegans_69_215 (Roundworm) 2

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 2

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 5

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Loa_loa_v3.3_(Request) (Eye worm) 2

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

STRING_v9.0.5_(STRING) 43

Uniprot_2018_03_genome 3987

TargetDB__(Targets) 2

NCBI_2017_08_genome 749

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Domain combinations for _gap_,57903,82199,_gap_ superfamilies in groups of genomes