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  Home > SCOP hierarchy > Domain combination - _gap_,57903,_gap_

Domain combinations for _gap_,57903,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57903 - FYVE/PHD zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   82
Pan_troglodytes_76_2.1.4   (Chimpanzee)   16
Gorilla_gorilla_76_3.1   (Western gorilla)   21
Pongo_abelii_76_2   (Sumatran orangutan)   15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   20
Papio_anubis_76   (Olive baboon)   19
Macaca_mulatta_76_1   (Rhesus monkey)   25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   46
Otolemur_garnettii_76_3   (Small-eared galago)   18
Microcebus_murinus_76_1   (Gray mouse lemur)   15
Rattus_norvegicus_76_5.0   (Norway rat)   23
Mus_musculus_76_38   (House mouse)   53
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   15
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   20
Cavia_porcellus_76_3   (Domestic guinea pig)   22
Oryctolagus_cuniculus_76_2   (Rabbit)   19
Ochotona_princeps_76   (American pika)   17
Tupaia_belangeri_76   (Northern tree shrew)   13
Sus_scrofa_76_10.2   (Pig)   20
Bos_taurus_76_3.1   (Cattle)   15
Ovis_aries_76_3.1   (Sheep)   15
Vicugna_pacos_76_1   (Alpaca)   12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_76_1.0   (Domestic ferret)   18
Ailuropoda_melanoleuca_76_1   (Giant panda)   19
Canis_familiaris_76_3.1   (Dog)   26
Felis_catus_76_6.2   (Domestic cat)   19
Equus_caballus_76_2   (Horse)   21
Myotis_lucifugus_76_2.0   (Little brown bat)   21
Pteropus_vampyrus_76_1   (Large flying fox)   15
Sorex_araneus_76_1   (European shrew)   16
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   23
Echinops_telfairi_76   (Small Madagascar hedgehog)   15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   21
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   13
Macropus_eugenii_76_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   25
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   20
Ornithorhynchus_anatinus_76_5   (Platypus)   13
Saccoglossus_kowalevskii_v3.0 31
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   21
Gallus_gallus_76_4   (Chicken)   18
Anas_platyrhynchos_76_1.0   (Mallard)   13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   20
Anolis_carolinensis_76_2.0   (Green anole)   16
Xenopus_laevis_   (African clawed frog)   24
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   19
Latimeria_chalumnae_76_1   (Coelacanth)   17
Lepisosteus_oculatus_76   (Spotted gar)   22
Gadus_morhua_76_1   (Atlantic cod)   18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   22
Takifugu_rubripes_76_4   (Torafugu)   42
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   24
Oryzias_latipes_76_1   (Japanese medaka)   20
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   17
Poecilia_formosa_76   (Amazon molly)   16
Oreochromis_niloticus_76_1.0   (Nile tilapia)   28
Astyanax_mexicanus_76   (Mexican tetra)   19
Danio_rerio_76_9   (Zebrafish)   39
Oikopleura_dioica 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   21
Adineta_vaga 27
Octopus_bimaculoides_280 30
Crassostrea_gigas_22   (Pacific oyster)   8
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 21
Capitella_sp._I_ 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   12
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9
Linepithema_humile_v1.1   (Argentine ant)   14
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   12
Atta_cephalotes_v1.1 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   13
Lucilia_cuprina   (Australian sheep blowfly)   13
Drosophila_grimshawi_1.3 15
Drosophila_willistoni_1.3 13
Drosophila_pseudoobscura_2.13 14
Drosophila_persimilis_1.3 16
Drosophila_suzukii 13
Drosophila_yakuba_1.3 13
Drosophila_simulans_1.3 12
Drosophila_sechellia_1.3 14
Drosophila_melanogaster_76_5   (Fruit fly)   32
Drosophila_erecta_1.3 12
Drosophila_ananassae_1.3 13
Drosophila_virilis_1.2 12
Drosophila_mojavensis_1.3 11
Megaselia_scalaris_22 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   9
Tribolium_castaneum_3.0   (Red flour beetle)   11
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   14
Acyrthosiphon_pisum_   (Pea aphid)   7
Rhodnius_prolixus_22 4
Daphnia_pulex_   (Common water flea)   14
Strigamia_maritima_22 7
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   11
Caenorhabditis_japonica_ 9
Caenorhabditis_brenneri_ 18
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   12
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 13
Hymenolepis_microstoma_ 8
Echinococcus_multilocularis_ 9
Echinococcus_granulosus_ 9
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 10
Mnemiopsis_leidyi   (Sea walnut)   15
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   7
Hydra_vulgaris 13
Amphimedon_queenslandica 11
Trichoplax_adhaerens_ 10
Proterospongia_sp._ATCC_50818_ 7
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 11
Conidiobolus_coronatus_NRRL28638_v1.0 7
Mortierella_verticillata_NRRL_6337_ 13
Phycomyces_blakesleeanus_ 12
Rhizopus_oryzae_RA_99-880_ 7
Mucor_circinelloides_ 10
Rhizomucor_miehei_CAU432_ 7
Malassezia_globosa_CBS_7966_ 12
Sporisorium_reilianum_22 5
Ustilago_maydis_ 6
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7
Melampsora_laricis-populina_ 7
Rhodotorula_graminis_WP1_v1.0 5
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 6
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 7
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 5
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 10
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 14
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 6
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   9
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5
Galerina_marginata_v1.0 12
Hebeloma_cylindrosporum_h7_v2.0 15
Laccaria_bicolor_S238N-H82_ 13
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 9
Stereum_hirsutum_FP-91666_SS1__v1.0 10
Heterobasidion_annosum_ 5
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 6
Sebacina_vermifera_MAFF_305830_v1.0 9
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 10
Wolfiporia_cocos_MD-104_SS10__v1.0 6
Fomitopsis_pinicolav1.0 8
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 7
Trametes_versicolor_v1.0 8
Tremella_mesenterica_   (Witches' butter)   5
Daldinia_eschscholzii_EC12_v1.0 10
Apiospora_montagnei_NRRL_25634_v1.0 8
Magnaporthe_poae_ATCC_64411_22 6
Magnaporthe_grisea_70-15_ 7
Podospora_anserina_ 7
Sporotrichum_thermophile_ATCC_42464_ 8
Thielavia_terrestris_NRRL_8126_ 8
Chaetomium_globosum_CBS_148.51_ 6
Neurospora_tetrasperma_ 10
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   9
Verticillium_albo-atrum_VaMs.102_ 8
Verticillium_dahliae_VdLs.17_ 7
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 8
Fusarium_graminearum_ 8
Nectria_haematococca_mpVI_ 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 9
Fusarium_verticillioides_7600_ 9
Trichoderma_asperellum_CBS_433.97_v1.0 8
Trichoderma_atroviride_ 8
Trichoderma_citrinoviride_v1.0 6
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 8
Trichoderma_longibrachiatum_ATCC_18648_v1.0 8
Trichoderma_harzianum_CBS_226.95_v1.0 10
Amorphotheca_resinae_v1.0   (Creosote fungus)   7
Botrytis_cinerea_B05.10_ 9
Sclerotinia_sclerotiorum_ 8
Blumeria_graminis_22 7
Didymella_exigua_CBS_183.55_v1.0 7
Leptosphaeria_maculans_22 8
Setosphaeria_turcica_v1.0 9
Cochliobolus_miyabeanus_ATCC_44560_v1.0 10
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 10
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   8
Alternaria_brassicicola_ 12
Cochliobolus_lunatus_m118_v2.0 7
Pyrenophora_teres_f._teres_22 10
Pyrenophora_tritici-repentis_ 8
Stagonospora_nodorum_ 9
Mycosphaerella_graminicola_IPO323_ 8
Zasmidium_cellare_ATCC_36951_v1.0 9
Dothistroma_septosporum 12
Septoria_musiva_v1.0 11
Mycosphaerella_fijiensis_CIRAD86_ 9
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5
Microsporum_canis_CBS_113480_ 5
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 5
Trichophyton_rubrum_CBS_118892_ 5
Uncinocarpus_reesii_1704_ 5
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 9
Penicillium_chrysogenum_v1.0 9
Aspergillus_acidus_v1.0 7
Aspergillus_fumigatus_Af293 8
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 6
Aspergillus_sydowii_v1.0 6
Aspergillus_versicolor_v1.0 6
Aspergillus_glaucus 8
Aspergillus_carbonarius_ITEM_5010_ 8
Neosartorya_fischeri_NRRL_181_ 6
Aspergillus_terreus_NIH2624_ 6
Aspergillus_tubingensis_v1.0 7
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 6
Aspergillus_niger_ATCC_1015_ 6
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 6
Penicillium_marneffei_ATCC_18224_ 8
Tuber_melanosporum_Mel28_22 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   6
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5
Candida_dubliniensis_CD36_ 5
Candida_tropicalis_MYA-3404_ 6
Candida_parapsilosis_ 5
Candida_albicans_SC5314 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 7
Pichia_stipitis_CBS_6054_ 6
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 5
Wickerhamomyces_anomalus 5
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5
Vanderwaltozyma_polyspora_DSM_70294_ 6
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 9
Schizosaccharomyces_octosporus_yFS286_ 10
Schizosaccharomyces_japonicus_yFS275_ 10
Schizosaccharomyces_pombe   (Fission yeast)   10
Catenaria_anguillulae_PL171_v1.0 9
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 6
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 4
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 31
Pinus_taeda   (Loblolly pine)   19
Picea_abies   (Norway spruce)   16
Eucalyptus_grandis_v201   (Rose gum)   25
Theobroma_cacao_B97-61/B2_v1   (Cacao)   14
Gossypium_raimondii_v221 61
Citrus_clementina_v165 19
Citrus_sinensis_v154   (Sweet orange)   53
Thellungiella_halophila_v173 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   18
Capsella_rubella_v183 15
Arabidopsis_lyrata_   (Lyrate rockcress)   12
Arabidopsis_thaliana_10   (Thale cress)   17
Carica_papaya_   (Papaya)   13
Medicago_truncatula_   (Barrel medic)   28
Phaseolus_vulgaris_v186   (French bean)   26
Glycine_max_v109   (Soybean)   37
Cucumis_sativus_v122   (Cucumber)   20
Fragaria_vesca_   (Wild strawberry)   19
Malus_domestica_v196   (Apple)   29
Prunus_persica_v139   (Peach)   13
Linum_usitatissimum_v200   (Flax)   26
Manihot_esculenta_v147   (Cassava)   23
Populus_trichocarpa_v156   (Black cottonwood)   27
Vitis_vinifera_   (Wine grape)   9
Mimulus_guttatus_v140   (Spotted monkey flower)   16
Solanum_lycopersicum_v.2.3   (Tomato)   16
Solanum_tuberosum_   (Potato)   20
Actinidia_chinensis_Hongyang_ 27
Aquilegia_coerulea_v195 24
Triticum_urartu_22 22
Triticum_aestivum_22   (Bread wheat)   53
Aegilops_tauschii_22 23
Brachypodium_distachyon_   (Stiff brome)   21
Oryza_barthii_22   (African wild rice)   21
Oryza_meridionalis_22 24
Oryza_glumaepatula_22 35
Oryza_glaberrima   (African rice)   17
Oryza_punctata_22 31
Oryza_nivara_22 27
Oryza_brachyantha_22   (Malo sina)   16
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   19
Oryza_sativa_v193   (Rice)   19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   30
Panicum_virgatum_v202   (Switchgrass)   35
Setaria_italica_v164   (Foxtail millet)   20
Zea_mays_subsp._mays_   (Maize)   42
Zea_mays_v181   (Maize)   44
Sorghum_bicolor_   (Sorghum)   18
Musa_balbisiana   (Balbis banana)   22
Musa_acuminata_22   (Wild Malaysian banana)   17
Amborella_trichopoda_22 10
Physcomitrella_patens 18
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 9
Volvox_carteri_f._nagariensis_ 8
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 20
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 8
Micromonas_sp._RCC299_ 5
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 6
Cyanidioschyzon_merolae 6
Porphyridium_purpureum_02_2012 4
Thecamonas_trahens_ATCC_50062_ 6
Bigelowiella_natans_CCMP2755_22 7
Giardia_lamblia_2.3 3
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 6
Trypanosoma_congolense_2.4 4
Trypanosoma_brucei_gambiense_v4.1 7
Trypanosoma_brucei_TREU927_v4.1 5
Ectocarpus_siliculosus 21
Aureococcus_anophagefferens_ 11
Albugo_laibachii_22 38
Pythium_iwayamai_DAOM_BR242034_22 38
Pythium_arrhenomanes_ATCC_12531_22 51
Pythium_ultimum_v1.7-2 61
Pythium_aphanidermatum_DAOM_BR444_22 49
Pythium_irregulare_DAOM_BR486_22 61
Pythium_vexans_DAOM_BR484_22 52
Phytophthora_ramorum_1.1   (Sudden oak death agent)   64
Phytophthora_sojae_1.1 68
Phytophthora_infestans_T30-4_ 60
Phytophthora_capsici_ 51
Hyaloperonospora_arabidopsidis_22 46
Phaeodactylum_tricornutumCCAP_1055/1 12
Fragilariopsis_cylindrus 10
Thalassiosira_pseudonana_CCMP1335 6
Perkinsus_marinus_ATCC_50983_ 10
Paramecium_tetraurelia_ 53
Tetrahymena_thermophila_SB210_1_ 13
Ichthyophthirius_multifiliis_strain_G5_ 3
Cryptosporidium_hominis 5
Cryptosporidium_muris 5
Cryptosporidium_parvum_Iowa_II 5
Neospora_caninum 7
Toxoplasma_gondii_VEG 5
Toxoplasma_gondii_ME49 5
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 10
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 3
Guillardia_theta_CCMP2712_v1.0_ 9
Emiliania_huxleyi_CCMP1516_ 13
butyrate-producing_bacterium_SM4/1 1
Thermofilum_pendens_Hrk_5 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   24
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   24
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10
Cryptococcus_neoformans_var._grubii_H99_ 6
Cryptococcus_neoformans_B-3501A_ 9
Cryptococcus_neoformans_JEC21_ 11
Paracoccidioides_brasiliensis_Pb01_ 5
Paracoccidioides_brasiliensis_Pb03_ 6
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 7
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 6
Histoplasma_capsulatum_H143 7
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 6
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 6
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 2
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 3
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 10
Batrachochytrium_dendrobatidis_JEL423_ 7
Batrachochytrium_dendrobatidis_JAM81_ 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   17
Hordeum_vulgare_22   (Domesticated barley)   91
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   21
Trypanosoma_brucei_Lister_427_v4.1 5
Neospora_caninum_Nc-Liverpool_6.2 7
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 0
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Methanomethylovorans_hollandica_DSM_15978 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   19
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   17
Pongo_abelii_69_2   (Sumatran orangutan)   15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   17
Macaca_mulatta_69_1   (Rhesus monkey)   15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21
Otolemur_garnettii_69_3   (Small-eared galago)   17
Microcebus_murinus_69_1   (Gray mouse lemur)   15
Rattus_norvegicus_69_3.4   (Norway rat)   16
Mus_musculus_69_38   (House mouse)   18
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14
Cavia_porcellus_69_3   (Domestic guinea pig)   21
Oryctolagus_cuniculus_69_2   (Rabbit)   16
Ochotona_princeps_69   (American pika)   17
Tupaia_belangeri_69   (Northern tree shrew)   13
Sus_scrofa_69_10.2   (Pig)   17
Bos_taurus_69_3.1   (Cattle)   15
Vicugna_pacos_69_1   (Alpaca)   12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_69_1.0   (Domestic ferret)   18
Ailuropoda_melanoleuca_69_1   (Giant panda)   17
Canis_familiaris_69_3.1   (Dog)   17
Felis_catus_69   (Domestic cat)   13
Equus_caballus_69_2   (Horse)   17
Myotis_lucifugus_69_2.0   (Little brown bat)   18
Pteropus_vampyrus_69_1   (Large flying fox)   15
Sorex_araneus_69_1   (European shrew)   16
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   13
Macropus_eugenii_69_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   17
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   18
Ornithorhynchus_anatinus_69_5   (Platypus)   13
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   16
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16
Anolis_carolinensis_69_2.0   (Green anole)   15
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_69_1   (Coelacanth)   13
Gadus_morhua_69_1   (Atlantic cod)   15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18
Takifugu_rubripes_69_4   (Torafugu)   17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14
Oryzias_latipes_69_1   (Japanese medaka)   15
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   17
Oreochromis_niloticus_69_1.0   (Nile tilapia)   18
Danio_rerio_69_9   (Zebrafish)   19
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_69   (Vase tunicate)   8
Drosophila_melanogaster_69_5   (Fruit fly)   11
Caenorhabditis_elegans_69_215   (Roundworm)   6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   12

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   90
Homo_sapiens__(NCBI_version)   (Human)   37
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   18
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   13
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 21
Malus_x_domestica_(Duplicate)   (Apple)   29
Ricinus_communis__(Early_assembly)   (Castor bean)   10
Nicotiana_benthamiana_0.4.4_(Early_draft) 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   16
Phoenix_dactylifera__(Early_draft)   (Date palm)   24
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 18
Protozoadb_2010_08_(Protozoadb) 101
STRING_v9.0.5_(STRING) 1269
Uniprot_2018_03_genome 87280
NCBI_2017_08_genome 18442
Protein_Data_Bank_(all_PDB_sequenc) 6

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.