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  Home > SCOP hierarchy > Domain combination - _gap_,57959

Domain combinations for _gap_,57959 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57959 - Leucine zipper domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   67
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_76_3.1   (Western gorilla)   22
Pongo_abelii_76_2   (Sumatran orangutan)   14
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   16
Macaca_mulatta_76_1   (Rhesus monkey)   37
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   31
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   10
Rattus_norvegicus_76_5.0   (Norway rat)   21
Mus_musculus_76_38   (House mouse)   56
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   17
Cavia_porcellus_76_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_76_2   (Rabbit)   13
Ochotona_princeps_76   (American pika)   7
Tupaia_belangeri_76   (Northern tree shrew)   8
Sus_scrofa_76_10.2   (Pig)   21
Bos_taurus_76_3.1   (Cattle)   12
Ovis_aries_76_3.1   (Sheep)   13
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_76_1   (Giant panda)   14
Canis_familiaris_76_3.1   (Dog)   16
Felis_catus_76_6.2   (Domestic cat)   13
Equus_caballus_76_2   (Horse)   11
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   17
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   16
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_76_5   (Platypus)   15
Saccoglossus_kowalevskii_v3.0 16
Petromyzon_marinus_76_7.0   (Sea lamprey)   8
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   11
Anas_platyrhynchos_76_1.0   (Mallard)   11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   14
Xenopus_laevis_   (African clawed frog)   38
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_76_1   (Coelacanth)   18
Lepisosteus_oculatus_76   (Spotted gar)   17
Gadus_morhua_76_1   (Atlantic cod)   15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   23
Takifugu_rubripes_76_4   (Torafugu)   54
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   21
Oryzias_latipes_76_1   (Japanese medaka)   19
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   22
Poecilia_formosa_76   (Amazon molly)   19
Oreochromis_niloticus_76_1.0   (Nile tilapia)   26
Astyanax_mexicanus_76   (Mexican tetra)   19
Danio_rerio_76_9   (Zebrafish)   36
Oikopleura_dioica 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8
Adineta_vaga 23
Octopus_bimaculoides_280 9
Crassostrea_gigas_22   (Pacific oyster)   17
Lottia_gigantea_   (Owl limpet)   12
Helobdella_robusta_ 6
Capitella_sp._I_ 9
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   6
Bombyx_mori_   (Domestic silkworm)   9
Nasonia_vitripennis_   (Jewel wasp)   8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   9
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7
Atta_cephalotes_v1.1 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8
Lucilia_cuprina   (Australian sheep blowfly)   10
Drosophila_grimshawi_1.3 10
Drosophila_willistoni_1.3 10
Drosophila_pseudoobscura_2.13 8
Drosophila_persimilis_1.3 9
Drosophila_suzukii 6
Drosophila_yakuba_1.3 9
Drosophila_simulans_1.3 7
Drosophila_sechellia_1.3 9
Drosophila_melanogaster_76_5   (Fruit fly)   34
Drosophila_erecta_1.3 10
Drosophila_ananassae_1.3 8
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 9
Megaselia_scalaris_22 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   10
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11
Anopheles_darlingi_22   (American malaria mosquito)   8
Anopheles_gambiae_49_3j   (African malaria mosquito)   13
Tribolium_castaneum_3.0   (Red flour beetle)   10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8
Acyrthosiphon_pisum_   (Pea aphid)   10
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   9
Strigamia_maritima_22 12
Sarcoptes_scabiei 8
Tetranychus_urticae_   (Two-spotted spider mite)   19
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12
Pristionchus_pacificus_ 11
Meloidogyne_incognita_   (Southern root-knot nematode)   13
Meloidogyne_hapla_ 8
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 11
Caenorhabditis_brenneri_ 10
Caenorhabditis_remanei_ 17
Caenorhabditis_elegans_76_235   (Roundworm)   33
Caenorhabditis_briggsae_2 12
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   9
Hydra_vulgaris 13
Amphimedon_queenslandica 9
Trichoplax_adhaerens_ 8
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 12
Conidiobolus_coronatus_NRRL28638_v1.0 6
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 13
Rhizopus_oryzae_RA_99-880_ 10
Mucor_circinelloides_ 10
Rhizomucor_miehei_CAU432_ 4
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 7
Wallemia_sebi_v1.0 7
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 7
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 2
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 15
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 3
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 4
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 5
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 2
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 6
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 2
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 5
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 5
Candida_albicans_SC5314 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 4
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 4
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 4
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 6
Allomyces_macrogynus_ATCC_38327_ 13
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 2
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 7
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   8
Eucalyptus_grandis_v201   (Rose gum)   25
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12
Gossypium_raimondii_v221 76
Citrus_clementina_v165 27
Citrus_sinensis_v154   (Sweet orange)   31
Thellungiella_halophila_v173 23
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   30
Capsella_rubella_v183 19
Arabidopsis_lyrata_   (Lyrate rockcress)   17
Arabidopsis_thaliana_10   (Thale cress)   29
Carica_papaya_   (Papaya)   9
Medicago_truncatula_   (Barrel medic)   33
Phaseolus_vulgaris_v186   (French bean)   24
Glycine_max_v109   (Soybean)   48
Cucumis_sativus_v122   (Cucumber)   30
Fragaria_vesca_   (Wild strawberry)   10
Malus_domestica_v196   (Apple)   23
Prunus_persica_v139   (Peach)   14
Linum_usitatissimum_v200   (Flax)   12
Manihot_esculenta_v147   (Cassava)   25
Populus_trichocarpa_v156   (Black cottonwood)   27
Vitis_vinifera_   (Wine grape)   12
Mimulus_guttatus_v140   (Spotted monkey flower)   23
Solanum_lycopersicum_v.2.3   (Tomato)   15
Solanum_tuberosum_   (Potato)   24
Actinidia_chinensis_Hongyang_ 18
Aquilegia_coerulea_v195 14
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   37
Aegilops_tauschii_22 11
Brachypodium_distachyon_   (Stiff brome)   22
Oryza_barthii_22   (African wild rice)   21
Oryza_meridionalis_22 20
Oryza_glumaepatula_22 24
Oryza_glaberrima   (African rice)   12
Oryza_punctata_22 24
Oryza_nivara_22 22
Oryza_brachyantha_22   (Malo sina)   15
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   29
Oryza_sativa_v193   (Rice)   29
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   19
Panicum_virgatum_v202   (Switchgrass)   50
Setaria_italica_v164   (Foxtail millet)   19
Zea_mays_subsp._mays_   (Maize)   36
Zea_mays_v181   (Maize)   44
Sorghum_bicolor_   (Sorghum)   22
Musa_balbisiana   (Balbis banana)   13
Musa_acuminata_22   (Wild Malaysian banana)   36
Amborella_trichopoda_22 14
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 6
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 6
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 4
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 5
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 10
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 1
Tetrahymena_thermophila_SB210_1_ 0
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 3
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 0
Butyrivibrio_proteoclasticus_B316 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   31
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   15
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   11
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   24
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 2
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   13
Hordeum_vulgare_22   (Domesticated barley)   48
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   19

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   14
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   16
Pongo_abelii_69_2   (Sumatran orangutan)   13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   11
Macaca_mulatta_69_1   (Rhesus monkey)   17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_69_3   (Small-eared galago)   14
Microcebus_murinus_69_1   (Gray mouse lemur)   10
Rattus_norvegicus_69_3.4   (Norway rat)   14
Mus_musculus_69_38   (House mouse)   14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11
Cavia_porcellus_69_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_69_2   (Rabbit)   12
Ochotona_princeps_69   (American pika)   7
Tupaia_belangeri_69   (Northern tree shrew)   8
Sus_scrofa_69_10.2   (Pig)   12
Bos_taurus_69_3.1   (Cattle)   11
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_69_1   (Giant panda)   14
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   11
Myotis_lucifugus_69_2.0   (Little brown bat)   17
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   15
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_69_5   (Platypus)   13
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12
Anolis_carolinensis_69_2.0   (Green anole)   13
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_69_1   (Coelacanth)   15
Gadus_morhua_69_1   (Atlantic cod)   15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   21
Takifugu_rubripes_69_4   (Torafugu)   19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   15
Oryzias_latipes_69_1   (Japanese medaka)   14
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   19
Danio_rerio_69_9   (Zebrafish)   22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   8
Caenorhabditis_elegans_69_215   (Roundworm)   10
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   15

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   71
Homo_sapiens__(NCBI_version)   (Human)   43
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 16
Malus_x_domestica_(Duplicate)   (Apple)   23
Ricinus_communis__(Early_assembly)   (Castor bean)   16
Nicotiana_benthamiana_0.4.4_(Early_draft) 32
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   14
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   15
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Protozoadb_2010_08_(Protozoadb) 16
UniProt__viral_sequences_(Viral) 11
NCBI_viral_sequences_(Viral) 4
Protein_Data_Bank_(all_PDB_sequenc) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 0
STRING_v9.0.5_(STRING) 857
Uniprot_2018_03_genome 32349
NCBI_2017_08_genome 14135
TargetDB__(Targets) 21

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.