SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,57997,_gap_,47769,47769,47769 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57997 - Tropomyosin
47769 - SAM/Pointed domain
47769 - SAM/Pointed domain
47769 - SAM/Pointed domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Bos_taurus_76_3.1   (Cattle)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Felis_catus_76_6.2   (Domestic cat)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Drosophila_grimshawi_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Strigamia_maritima_22 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2

Longest transcript per gene
Genome     Number
Otolemur_garnettii_69_3   (Small-eared galago)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Bos_taurus_69_3.1   (Cattle)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 6
Uniprot_2018_03_genome 612
NCBI_2017_08_genome 31

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]