Domain combinations for _gap_,63763,57903,47370 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63763 - SAND domain-like
57903 - FYVE/PHD zinc finger
47370 - Bromodomain

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene

Genome		Number
Homo_sapiens_69_37	(Human)	4
Pan_troglodytes_69_2.1.4	(Chimpanzee)	3
Gorilla_gorilla_69_3.1	(Western gorilla)	2
Pongo_abelii_69_2	(Sumatran orangutan)	3
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	3
Macaca_mulatta_69_1	(Rhesus monkey)	1
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	4
Otolemur_garnettii_69_3	(Small-eared galago)	1
Microcebus_murinus_69_1	(Gray mouse lemur)	3
Rattus_norvegicus_69_3.4	(Norway rat)	1
Mus_musculus_69_38	(House mouse)	1
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	1
Cavia_porcellus_69_3	(Domestic guinea pig)	1
Ochotona_princeps_69	(American pika)	1
Tupaia_belangeri_69	(Northern tree shrew)	1
Sus_scrofa_69_10.2	(Pig)	2
Vicugna_pacos_69_1	(Alpaca)	1
Tursiops_truncatus_69_1	(Bottlenose dolphin)	2
Mustela_putorius_furo_69_1.0	(Domestic ferret)	2
Ailuropoda_melanoleuca_69_1	(Giant panda)	1
Canis_familiaris_69_3.1	(Dog)	2
Felis_catus_69	(Domestic cat)	1
Equus_caballus_69_2	(Horse)	1
Myotis_lucifugus_69_2.0	(Little brown bat)	1
Pteropus_vampyrus_69_1	(Large flying fox)	3
Sorex_araneus_69_1	(European shrew)	1
Erinaceus_europaeus_69	(Western European hedgehog)	1
Procavia_capensis_69_1	(Cape rock hyrax)	1
Loxodonta_africana_69_3	(African savanna elephant)	1
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	0
Latimeria_chalumnae_69_1	(Coelacanth)	0
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	0
Danio_rerio_69_9	(Zebrafish)	0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others

Genome		Number
Homo_sapiens_75_37_(old_version_GRC)	(Human)	10
Homo_sapiens__(NCBI_version)	(Human)	5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	1
STRING_v9.0.5_(STRING)		20
Uniprot_2018_03_genome		2180
NCBI_2017_08_genome		1008

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]