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  Home > SCOP hierarchy > Domain combination - _gap_,63825

Domain combinations for _gap_,63825 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63825 - YWTD domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14
Adineta_vaga 16
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 0
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 1
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 9
Mortierella_verticillata_NRRL_6337_ 0
Ustilago_maydis_ 0
Galerina_marginata_v1.0 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Fomitiporia_mediterranea_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 1
Podospora_anserina_ 0
Trichoderma_virens_Gv29-8_ 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Pyrenophora_teres_f._teres_22 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_nidulans_FGSC_A4_ 0
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 0
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   2
Glycine_max_v109   (Soybean)   2
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   1
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   2
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 2
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 3
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_vulgaris_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 4
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 3
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 3
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 8
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 0
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 12
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 6
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 0
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_6312 0
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 1
Microcystis_aeruginosa_NIES-843 0
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 0
Anabaena_sp._90 0
Eggerthella_lenta_DSM_2243 0
Olsenella_uli_DSM_7084 1
Ilumatobacter_coccineus 0
Acidimicrobium_ferrooxidans_DSM_10331 0
Nakamurella_multipartita_DSM_44233 0
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 2
Frankia_alni_ACN14a 2
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Saccharopolyspora_erythraea_NRRL_2338 3
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 2
Micromonospora_aurantiaca_ATCC_27029 2
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 0
Rhodococcus_opacus_B4 1
Mycobacterium_sp._JLS 1
Mycobacterium_smegmatis_str._MC2_155 0
Beutenbergia_cavernae_DSM_12333 0
Leifsonia_xyli_subsp._xyli_str._CTCB07 0
Intrasporangium_calvum_DSM_43043 0
Cellulomonas_flavigena_DSM_20109 0
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_sp._FB24 1
Roseiflexus_sp._RS-1 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_deserti_VCD115 1
Deinococcus_proteolyticus_MRP 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Desulfosporosinus_acidiphilus_SJ4 0
Desulfotomaculum_acetoxidans_DSM_771 0
Clostridium_lentocellum_DSM_5427 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Coprococcus_sp._ART55/1 1
Clostridium_novyi_NT 0
Clostridium_ljungdahlii_DSM_13528 0
Clostridium_kluyveri_DSM_555 0
Clostridium_botulinum_A_str._ATCC_3502 0
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_bescii_DSM_6725 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_kefiranofaciens_ZW3 0
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 0
Lactobacillus_buchneri_NRRL_B-30929 2
Lactobacillus_buchneri 2
Lactobacillus_brevis_ATCC_367 1
Lactobacillus_acidophilus_30SC 1
Pediococcus_claussenii_ATCC_BAA-344 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_mucilaginosus_3016 1
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Candidatus_Cloacamonas_acidaminovorans 1
Gemmatimonas_aurantiaca_T-27 0
Ignavibacterium_album_JCM_16511 1
Chlorobium_chlorochromatii_CaD3 0
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Salinibacter_ruber_M8 0
Flexibacter_litoralis_DSM_6794 1
Cyclobacterium_marinum_DSM_745 1
Fibrella_aestuarina 2
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 0
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 1
Prevotella_intermedia_17 1
Prevotella_ruminicola_23 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 2
Pedobacter_heparinus_DSM_2366 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 3
Zunongwangia_profunda_SM-A87 1
Gramella_forsetii_KT0803 1
Lacinutrix_sp._5H-3-7-4 0
Robiginitalea_biformata_HTCC2501 1
Croceibacter_atlanticus_HTCC2559 1
Aequorivita_sublithincola_DSM_14238 0
Cellulophaga_lytica_DSM_7489 1
Flavobacteriaceae_bacterium_3519-10 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Weeksella_virosa_DSM_16922 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_johnsoniae_UW101 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Isosphaera_pallida_ATCC_43644 0
Rhodopirellula_baltica_SH_1 1
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 0
Turneriella_parva_DSM_21527 2
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Brachyspira_hyodysenteriae_WA1 0
Treponema_azotonutricium_ZAS-9 0
Treponema_brennaborense_DSM_12168 0
Treponema_paraluiscuniculi_Cuniculi_A 0
Treponema_pallidum_subsp._pallidum_SS14 0
Spirochaeta_africana_DSM_8902 0
Deferribacter_desulfuricans_SSM1 1
Flexistipes_sinusarabici_DSM_4947 1
Kosmotoga_olearia_TBF_19.5.1 0
Thermosipho_africanus_TCF52B 0
Thermotoga_lettingae_TMO 0
Thermotoga_thermarum_DSM_5069 1
Candidatus_Chloracidobacterium_thermophilum_B 0
Candidatus_Solibacter_usitatus_Ellin6076 3
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 1
Leptospirillum_ferrooxidans_C2-3 0
Bacteriovorax_marinus_SJ 0
Bdellovibrio_bacteriovorus_HD100 1
Nitratifractor_salsuginis_DSM_16511 0
Campylobacter_curvus_525.92 0
Sulfurimonas_denitrificans_DSM_1251 1
Syntrophus_aciditrophicus_SB 0
Desulfomonile_tiedjei_DSM_6799 0
Syntrophobacter_fumaroxidans_MPOB 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 1
Desulfococcus_oleovorans_Hxd3 0
Desulfovibrio_magneticus_RS-1 1
Geobacter_daltonii_FRC-32 1
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 0
Pelobacter_carbinolicus_DSM_2380 0
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 3
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 2
Rubrivivax_gelatinosus_IL144 0
Burkholderia_xenovorans_LB400 0
Burkholderia_sp._RPE64 0
Burkholderia_sp._CCGE1002 0
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 1
Nitrosospira_multiformis_ATCC_25196 0
Nitrosomonas_sp._Is79A3 0
Sideroxydans_lithotrophicus_ES-1 1
Magnetococcus_marinus_MC-1 0
Parvularcula_bermudensis_HTCC2503 1
Brevundimonas_subvibrioides_ATCC_15264 0
Caulobacter_sp._K31 0
Caulobacter_segnis_ATCC_21756 0
Dinoroseobacter_shibae_DFL_12 0
Jannaschia_sp._CCS1 1
Polymorphum_gilvum_SL003B-26A1 0
alpha_proteobacterium_HIMB59 1
Parvibaculum_lavamentivorans_DS-1 0
Mesorhizobium_sp._BNC1 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 2
Cellvibrio_japonicus_Ueda107 0
Vibrio_harveyi_ATCC_BAA-1116 0
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 0
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_pealeana_ATCC_700345 0
Shewanella_oneidensis_MR-1 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_violacea_DSS12 0
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 0
Marinobacter_adhaerens_HP15 0
Alteromonas_sp._SN2 1
Kangiella_koreensis_DSM_16069 0
Hahella_chejuensis_KCTC_2396 1
Marinomonas_mediterranea_MMB-1 0
Legionella_longbeachae_NSW150 0
Pantoea_sp._At-9b 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_entomophila_L48 1
Pseudomonas_putida_F1 1
Pseudomonas_mendocina_ymp 1
Cenarchaeum_symbiosum_A 0
Candidatus_Nitrosopumilus_sp._AR2 1
Methanocella_paludicola_SANAE 0
Methanosaeta_concilii_GP6 0
Methanosarcina_barkeri_str._Fusaro 0
Methanosphaerula_palustris_E1-9c 0
Methanoplanus_petrolearius_DSM_11571 0
Methanocaldococcus_sp._FS406-22 1
Aciduliprofundum_sp._MAR08-339 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Trypanosoma_brucei_Lister_427_v4.1 0
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Chamaesiphon_minutus_PCC_6605 0
Dactylococcopsis_salina_PCC_8305 0
Synechococcus_sp._CC9605 0
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._MIT_9211 1
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 2
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 2
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 1
Frankia_sp._EuI1c 0
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 3
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_smegmatis_str._MC2_155 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 0
Actinomyces_viscosus_C505 0
Thermus_thermophilus_SG0.5JP17-16 0
Eubacterium_siraeum_V10Sc8a 1
Desulfosporosinus_meridiei_DSM_13257 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_saccharobutylicum_DSM_13864 3
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 1
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 1
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_brevis_KB290 1
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Salinibacter_ruber_DSM_13855 0
Rhodothermus_marinus_SG0.5JP17-172 0
Echinicola_vietnamensis_DSM_17526 2
Emticicia_oligotrophica_DSM_17448 1
Alistipes_shahii_WAL_8301 1
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Brachyspira_pilosicoli_WesB 1
Brachyspira_pilosicoli_B2904 1
Brachyspira_pilosicoli_P43/6/78 1
Treponema_pallidum_str._Fribourg-Blanc 0
Treponema_pallidum_subsp._pertenue_str._Gauthier 0
Treponema_pallidum_subsp._pertenue_str._CDC2 0
Treponema_pallidum_subsp._pertenue_str._SamoaD 0
Treponema_pallidum_subsp._pallidum_str._Mexico_A 0
Treponema_pallidum_subsp._pallidum_DAL-1 0
Treponema_pallidum_subsp._pallidum_str._Nichols 0
Leptospirillum_ferriphilum_ML-04 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Sorangium_cellulosum_So0157-2 7
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_pseudomallei_1026b 0
Burkholderia_lata 0
Variovorax_paradoxus_B4 1
Nitrosomonas_sp._AL212 1
Paracoccus_aminophilus_JCM_7686 0
Candidatus_Pelagibacter_ubique_HTCC1062 0
Ehrlichia_ruminantium_str._Welgevonden 0
Ehrlichia_ruminantium_str._Welgevonden 0
Sinorhizobium_fredii_USDA_257 0
Simiduia_agarivorans_SA1_=_DSM_21679 1
Vibrio_nigripulchritudo_VibrioScope 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Alcanivorax_dieselolei_B5 0
Thalassolituus_oleivorans_MIL-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_mendocina_NK-01 1
Methanomethylovorans_hollandica_DSM_15978 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 5
Protozoadb_2010_08_(Protozoadb) 4
Uniprot_2018_03_genome 10713
NCBI_2017_08_genome 4722
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 8
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3
Protein_Data_Bank_(all_PDB_sequenc) 0
NCBI_viral_sequences_(Viral) 3
STRING_v9.0.5_(STRING) 117

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.