SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,63825,_gap_,57196,57196,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63825 - YWTD domain
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_yakuba_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Strigamia_maritima_22 0

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0

Longest transcript per gene
Genome     Number
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 46
NCBI_2017_08_genome 3

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