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  Home > SCOP hierarchy > Domain combination - _gap_,63825,_gap_,57424,57424,57424,57424,57424,57424,57424,57424,_gap_

Domain combinations for _gap_,63825,_gap_,57424,57424,57424,57424,57424,57424,57424,57424,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63825 - YWTD domain
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Gadus_morhua_76_1   (Atlantic cod)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 0
Uniprot_2018_03_genome 48

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.