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Domain combinations for _gap_,64593,64593,_gap_,64593,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

64593 - Intermediate filament protein, coiled coil region
64593 - Intermediate filament protein, coiled coil region
64593 - Intermediate filament protein, coiled coil region

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   19
Gorilla_gorilla_76_3.1   (Western gorilla)   18
Pongo_abelii_76_2   (Sumatran orangutan)   11
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   19
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   57
Otolemur_garnettii_76_3   (Small-eared galago)   12
Microcebus_murinus_76_1   (Gray mouse lemur)   11
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   18
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   13
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   6
Sus_scrofa_76_10.2   (Pig)   12
Bos_taurus_76_3.1   (Cattle)   23
Ovis_aries_76_3.1   (Sheep)   18
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   14
Canis_familiaris_76_3.1   (Dog)   17
Felis_catus_76_6.2   (Domestic cat)   15
Equus_caballus_76_2   (Horse)   21
Myotis_lucifugus_76_2.0   (Little brown bat)   18
Pteropus_vampyrus_76_1   (Large flying fox)   13
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   18
Echinops_telfairi_76   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   12
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_76_5   (Platypus)   12
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   18
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   2
Takifugu_rubripes_76_4   (Torafugu)   13
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   3

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   18
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   16
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   37
Otolemur_garnettii_69_3   (Small-eared galago)   11
Microcebus_murinus_69_1   (Gray mouse lemur)   11
Rattus_norvegicus_69_3.4   (Norway rat)   9
Mus_musculus_69_38   (House mouse)   18
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   12
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   6
Sus_scrofa_69_10.2   (Pig)   12
Bos_taurus_69_3.1   (Cattle)   21
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   13
Canis_familiaris_69_3.1   (Dog)   13
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   18
Myotis_lucifugus_69_2.0   (Little brown bat)   18
Pteropus_vampyrus_69_1   (Large flying fox)   13
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   11
Echinops_telfairi_69   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   11
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   8
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Anolis_carolinensis_69_2.0   (Green anole)   6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   3
Gadus_morhua_69_1   (Atlantic cod)   2
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2
Danio_rerio_69_9   (Zebrafish)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   23
Homo_sapiens__(NCBI_version)   (Human)   19
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   18
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 202
Uniprot_2018_03_genome 22020
NCBI_2017_08_genome 2631

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