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  Home > SCOP hierarchy > Domain combination - _gap_,64593,_gap_,64593,_gap_

Domain combinations for _gap_,64593,_gap_,64593,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

64593 - Intermediate filament protein, coiled coil region
64593 - Intermediate filament protein, coiled coil region

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   52
Pan_troglodytes_76_2.1.4   (Chimpanzee)   31
Gorilla_gorilla_76_3.1   (Western gorilla)   52
Pongo_abelii_76_2   (Sumatran orangutan)   27
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   31
Papio_anubis_76   (Olive baboon)   35
Macaca_mulatta_76_1   (Rhesus monkey)   42
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   59
Otolemur_garnettii_76_3   (Small-eared galago)   34
Microcebus_murinus_76_1   (Gray mouse lemur)   27
Rattus_norvegicus_76_5.0   (Norway rat)   38
Mus_musculus_76_38   (House mouse)   39
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   21
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   26
Cavia_porcellus_76_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_76_2   (Rabbit)   28
Ochotona_princeps_76   (American pika)   19
Tupaia_belangeri_76   (Northern tree shrew)   27
Sus_scrofa_76_10.2   (Pig)   27
Bos_taurus_76_3.1   (Cattle)   31
Ovis_aries_76_3.1   (Sheep)   26
Vicugna_pacos_76_1   (Alpaca)   7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   17
Mustela_putorius_furo_76_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_76_1   (Giant panda)   37
Canis_familiaris_76_3.1   (Dog)   44
Felis_catus_76_6.2   (Domestic cat)   33
Equus_caballus_76_2   (Horse)   30
Myotis_lucifugus_76_2.0   (Little brown bat)   27
Pteropus_vampyrus_76_1   (Large flying fox)   23
Sorex_araneus_76_1   (European shrew)   12
Erinaceus_europaeus_76   (Western European hedgehog)   17
Procavia_capensis_76_1   (Cape rock hyrax)   17
Loxodonta_africana_76_3   (African savanna elephant)   37
Echinops_telfairi_76   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   22
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_76_1.0   (Tammar wallaby)   18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   35
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27
Ornithorhynchus_anatinus_76_5   (Platypus)   23
Petromyzon_marinus_76_7.0   (Sea lamprey)   7
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   10
Anas_platyrhynchos_76_1.0   (Mallard)   9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   23
Xenopus_laevis_   (African clawed frog)   95
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   27
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   20
Gadus_morhua_76_1   (Atlantic cod)   10
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   14
Takifugu_rubripes_76_4   (Torafugu)   42
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   33
Oryzias_latipes_76_1   (Japanese medaka)   21
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15
Poecilia_formosa_76   (Amazon molly)   22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   23
Astyanax_mexicanus_76   (Mexican tetra)   23
Danio_rerio_76_9   (Zebrafish)   42
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   3
Adineta_vaga 5
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   56
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   39
Pan_troglodytes_69_2.1.4   (Chimpanzee)   30
Gorilla_gorilla_69_3.1   (Western gorilla)   37
Pongo_abelii_69_2   (Sumatran orangutan)   27
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   26
Macaca_mulatta_69_1   (Rhesus monkey)   34
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   40
Otolemur_garnettii_69_3   (Small-eared galago)   34
Microcebus_murinus_69_1   (Gray mouse lemur)   27
Rattus_norvegicus_69_3.4   (Norway rat)   37
Mus_musculus_69_38   (House mouse)   35
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   29
Ochotona_princeps_69   (American pika)   19
Tupaia_belangeri_69   (Northern tree shrew)   27
Sus_scrofa_69_10.2   (Pig)   26
Bos_taurus_69_3.1   (Cattle)   31
Vicugna_pacos_69_1   (Alpaca)   7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   17
Mustela_putorius_furo_69_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_69_1   (Giant panda)   31
Canis_familiaris_69_3.1   (Dog)   34
Felis_catus_69   (Domestic cat)   14
Equus_caballus_69_2   (Horse)   29
Myotis_lucifugus_69_2.0   (Little brown bat)   27
Pteropus_vampyrus_69_1   (Large flying fox)   23
Sorex_araneus_69_1   (European shrew)   12
Erinaceus_europaeus_69   (Western European hedgehog)   17
Procavia_capensis_69_1   (Cape rock hyrax)   17
Loxodonta_africana_69_3   (African savanna elephant)   25
Echinops_telfairi_69   (Small Madagascar hedgehog)   12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_69_1.0   (Tammar wallaby)   18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   31
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   26
Ornithorhynchus_anatinus_69_5   (Platypus)   21
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   16
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   21
Latimeria_chalumnae_69_1   (Coelacanth)   12
Gadus_morhua_69_1   (Atlantic cod)   10
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   12
Takifugu_rubripes_69_4   (Torafugu)   13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   17
Oryzias_latipes_69_1   (Japanese medaka)   18
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20
Danio_rerio_69_9   (Zebrafish)   32
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   3
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   49
Homo_sapiens__(NCBI_version)   (Human)   34
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   35
STRING_v9.0.5_(STRING) 575
Uniprot_2018_03_genome 31122
NCBI_2017_08_genome 6795
TargetDB__(Targets) 17

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.