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Home > SCOP hierarchy > Domain combination - _gap_,74788,75632,46785

Domain combinations for _gap_,74788,75632,46785 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

74788 - Cullin repeat-like
75632 - Cullin homology domain
46785 - "Winged helix" DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 3

Pan_troglodytes_76_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_76_3.1 (Western gorilla) 1

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_76_3 (Small-eared galago) 1

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 3

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 2

Vicugna_pacos_76_1 (Alpaca) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Equus_caballus_76_2 (Horse) 2

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 2

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 2

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 2

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 1

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 1

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 1

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Poecilia_formosa_76 (Amazon molly) 1

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 2

Octopus_bimaculoides_280 1

Crassostrea_gigas_22 (Pacific oyster) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 2

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 3

Drosophila_persimilis_1.3 2

Drosophila_suzukii 1

Drosophila_yakuba_1.3 2

Drosophila_simulans_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 3

Drosophila_erecta_1.3 3

Drosophila_ananassae_1.3 2

Drosophila_virilis_1.2 2

Drosophila_mojavensis_1.3 2

Tribolium_castaneum_3.0 (Red flour beetle) 1

Strigamia_maritima_22 1

Meloidogyne_incognita_ (Southern root-knot nematode) 1

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 1

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 0

Acropora_digitifera_v1.0 1

Amphimedon_queenslandica 1

Proterospongia_sp._ATCC_50818_ 1

Capsaspora_owczarzaki_ATCC_30864_ 1

Mortierella_verticillata_NRRL_6337_ 1

Sporisorium_reilianum_22 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1

Rhodotorula_graminis_WP1_v1.0 1

Sporobolomyces_roseus_IAM_13481_ 1

Microbotryum_violaceum_22 2

Pisolithus_microcarpus_441_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Glomerella_graminicola_22 1

Blumeria_graminis_22 1

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 2

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Alternaria_brassicicola_ 1

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Dothistroma_septosporum 1

Septoria_musiva_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 2

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_verrucosum_HKI_0517_ 1

Arthroderma_benhamiae_CBS_112371_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 1

Aspergillus_zonatus_v1.0 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Penicillium_chrysogenum_v1.0 1

Aspergillus_acidus_v1.0 1

Aspergillus_fumigatus_Af293 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_wentii_v1.0 1

Aspergillus_niger_ATCC_1015_ 1

Aspergillus_flavus_NRRL3357_ 1

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Catenaria_anguillulae_PL171_v1.0 1

Allomyces_macrogynus_ATCC_38327_ 1

Spizellomyces_punctatus_DAOM_BR117_ 1

Gossypium_raimondii_v221 4

Cucumis_sativus_v122 (Cucumber) 1

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 1

Prunus_persica_v139 (Peach) 1

Manihot_esculenta_v147 (Cassava) 3

Populus_trichocarpa_v156 (Black cottonwood) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Actinidia_chinensis_Hongyang_ 1

Aquilegia_coerulea_v195 2

Triticum_aestivum_22 (Bread wheat) 1

Brachypodium_distachyon_ (Stiff brome) 2

Oryza_barthii_22 (African wild rice) 1

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 2

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 2

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 2

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 1

Bathycoccus_prasinos_ 1

Trypanosoma_vivax_ 1

Trypanosoma_congolense_2.4 1

Trypanosoma_brucei_gambiense_v4.1 1

Trypanosoma_brucei_TREU927_v4.1 1

Pythium_aphanidermatum_DAOM_BR444_22 1

Perkinsus_marinus_ATCC_50983_ 1

Naegleria_gruberi_ 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 2

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 3

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 1

Paracoccidioides_brasiliensis_Pb01_ 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_3703_ 1

Coccidioides_immitis_RMSCC_2394_ 1

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 1

Histoplasma_capsulatum_H143 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 1

Candida_albicans_WO-1_ 1

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Trypanosoma_brucei_Lister_427_v4.1 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Bos_taurus_69_3.1 (Cattle) 1

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_69_1 (Coelacanth) 2

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 1

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Danio_rerio_69_9 (Zebrafish) 1

Drosophila_melanogaster_69_5 (Fruit fly) 2

Caenorhabditis_elegans_69_215 (Roundworm) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 3

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Loa_loa_v3.3_(Request) (Eye worm) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Malus_x_domestica_(Duplicate) (Apple) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

STRING_v9.0.5_(STRING) 55

TargetDB__(Targets) 2

NCBI_2017_08_genome 687

Uniprot_2018_03_genome 7390

Protozoadb_2010_08_(Protozoadb) 1

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Domain combinations for _gap_,74788,75632,46785 superfamilies in groups of genomes