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  Home > SCOP hierarchy > Domain combination - _gap_,75005

Domain combinations for _gap_,75005 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

75005 - Arabinanase/levansucrase/invertase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Adineta_vaga 4
Daphnia_pulex_   (Common water flea)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 0
Schistosoma_mansoni_ 0
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 1
Piloderma_croceum_F_1598_v1.0 0
Amanita_thiersii_Skay4041_v1.0 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 1
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 0
Daldinia_eschscholzii_EC12_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 1
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Sclerotinia_sclerotiorum_ 0
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 5
Dothistroma_septosporum 1
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Ajellomyces_dermatitidis_SLH14081_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 2
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 2
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 1
Vanderwaltozyma_polyspora_DSM_70294_ 0
Kluyveromyces_thermotolerans_CBS_6340 0
Kluyveromyces_waltii 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 5
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   4
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   5
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 13
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   6
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 2
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   3
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 1
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 0
Bathycoccus_prasinos_ 1
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 3
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_congolense_2.4 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 2
Gloeobacter_violaceus_PCC_7421 1
Nostoc_punctiforme_PCC_73102 1
Mycoplasma_mobile_163K 0
Atopobium_parvulum_DSM_20469 0
Nakamurella_multipartita_DSM_44233 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 0
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 2
Actinosynnema_mirum_DSM_43827 2
Saccharomonospora_viridis_DSM_43017 0
Pseudonocardia_dioxanivorans_CB1190 1
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 1
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_kroppenstedtii_DSM_44385 0
Sanguibacter_keddieii_DSM_10542 3
Beutenbergia_cavernae_DSM_12333 0
Microbacterium_testaceum_StLB037 0
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Intrasporangium_calvum_DSM_43043 1
Brachybacterium_faecium_DSM_4810 0
Isoptericola_variabilis_225 0
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_chlorophenolicus_A6 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 0
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_dentium_Bd1 3
Bifidobacterium_bifidum_S17 1
Bifidobacterium_adolescentis_ATCC_15703 1
Actinomyces_sp._F0330 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Clostridium_clariflavum_DSM_19732 0
Eubacterium_siraeum 1
Clostridium_cellulolyticum_H10 1
Ethanoligenens_harbinense_YUAN-3 1
Faecalibacterium_prausnitzii 1
Ruminococcus_albus_7 1
Candidatus_Desulforudis_audaxviator_MP104C 1
Desulfosporosinus_acidiphilus_SJ4 1
Clostridium_saccharolyticum_WM1 1
Clostridium_lentocellum_DSM_5427 1
Coprococcus_sp._ART55/1 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Syntrophothermus_lipocalidus_DSM_12680 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Clostridium_sp._BNL1100 1
Clostridium_novyi_NT 0
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_cellulovorans_743B 1
Clostridium_acetobutylicum_ATCC_824 1
Mahella_australiensis_50-1_BON 0
Thermosediminibacter_oceani_DSM_16646 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 0
Melissococcus_plutonius_DAT561 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_crispatus_ST1 0
Lactobacillus_johnsonii_FI9785 0
Lactobacillus_sanfranciscensis_TMW_1.1304 0
Streptococcus_gallolyticus_UCN34 0
Streptococcus_uberis_0140J 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_mutans_NN2025 0
Streptococcus_sanguinis_SK36 0
Streptococcus_salivarius_57.I 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Exiguobacterium_sp._AT1b 2
Paenibacillus_sp._JDR-2 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 2
Paenibacillus_polymyxa_M1 1
Bacillus_sp._JS 0
Bacillus_amyloliquefaciens_FZB42 0
Bacillus_atrophaeus_1942 0
Bacillus_subtilis_subsp._subtilis_str._168 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_pumilus_SAFR-032 0
Bacillus_megaterium_DSM_319 0
Melioribacter_roseus_P3M 2
Ignavibacterium_album_JCM_16511 1
Haliscomenobacter_hydrossis_DSM_1100 2
Niastella_koreensis_GR20-10 3
Chitinophaga_pinensis_DSM_2588 6
Rhodothermus_marinus_DSM_4252 2
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 3
Fibrella_aestuarina 3
Leadbetterella_byssophila_DSM_17132 5
Dyadobacter_fermentans_DSM_18053 3
Spirosoma_linguale_DSM_74 2
Runella_slithyformis_DSM_19594 3
Parabacteroides_distasonis_ATCC_8503 3
Paludibacter_propionicigenes_WB4 2
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_intermedia_17 0
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 2
Alistipes_finegoldii_DSM_17242 1
Bacteroides_salanitronis_DSM_18170 2
Bacteroides_helcogenes_P_36-108 2
Bacteroides_vulgatus_ATCC_8482 3
Bacteroides_thetaiotaomicron_VPI-5482 7
Bacteroides_fragilis_YCH46 2
Pedobacter_saltans_DSM_12145 5
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 3
Sphingobacterium_sp._21 5
Zunongwangia_profunda_SM-A87 6
Gramella_forsetii_KT0803 1
Maribacter_sp._HTCC2170 4
Aequorivita_sublithincola_DSM_14238 0
Zobellia_galactanivorans 5
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 2
Cellulophaga_lytica_DSM_7489 2
Flavobacteriaceae_bacterium_3519-10 1
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_johnsoniae_UW101 6
Phycisphaera_mikurensis_NBRC_102666 1
Planctomyces_brasiliensis_DSM_5305 1
Rhodopirellula_baltica_SH_1 2
Coraliomargarita_akajimensis_DSM_45221 2
Opitutus_terrae_PB90-1 2
Akkermansia_muciniphila_ATCC_BAA-835 2
Fretibacterium_fastidiosum 1
Turneriella_parva_DSM_21527 1
Brachyspira_murdochii_DSM_12563 1
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 1
Treponema_azotonutricium_ZAS-9 1
Treponema_brennaborense_DSM_12168 1
Spirochaeta_thermophila_DSM_6192 2
Flexistipes_sinusarabici_DSM_4947 1
Dictyoglomus_turgidum_DSM_6724 1
Dictyoglomus_thermophilum_H-6-12 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Terriglobus_saanensis_SP1PR4 2
Acidobacterium_capsulatum_ATCC_51196 1
Leptotrichia_buccalis_C-1013-b 0
Ilyobacter_polytropus_DSM_2926 1
Sulfurimonas_autotrophica_DSM_16294 1
Desulfotalea_psychrophila_LSv54 1
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_metallireducens_GS-15 0
Sorangium_cellulosum_'So_ce_56' 5
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._BH72 1
Methylibium_petroleiphilum_PM1 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Cupriavidus_necator_N-1 1
Burkholderia_sp._RPE64 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 0
Burkholderia_mallei_SAVP1 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_vietnamiensis_G4 0
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Sideroxydans_lithotrophicus_ES-1 1
Asticcacaulis_excentricus_CB_48 2
Sphingopyxis_alaskensis_RB2256 0
Novosphingobium_sp._PP1Y 2
Novosphingobium_aromaticivorans_DSM_12444 2
Sphingobium_sp._SYK-6 2
Sphingobium_japonicum_UT26S 0
Sphingobium_chlorophenolicum_L-1 2
Sphingomonas_sp._MM-1 4
Sphingomonas_wittichii_RW1 1
Hirschia_baltica_ATCC_49814 2
Dinoroseobacter_shibae_DFL_12 1
Ruegeria_sp._TM1040 1
Rhodobacter_capsulatus_SB_1003 1
Rhodospirillum_rubrum_F11 1
Azospirillum_sp._B510 1
Gluconacetobacter_xylinus_NBRC_3288 0
Gluconacetobacter_diazotrophicus_PAl_5 0
Gluconobacter_oxydans_621H 0
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_sp._4-46 2
Methylobacterium_nodulans_ORS_2060 2
Methylobacterium_radiotolerans_JCM_2831 3
Parvibaculum_lavamentivorans_DS-1 1
Sinorhizobium_fredii_NGR234 0
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_tumefaciens_str._C58 0
Agrobacterium_sp._H13-3 0
Agrobacterium_vitis_S4 1
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Methylocella_silvestris_BL2 1
Beijerinckia_indica_subsp._indica_ATCC_9039 0
Bradyrhizobium_japonicum_USDA_110 2
Saccharophagus_degradans_2-40 2
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 1
Vibrio_anguillarum_775 0
Vibrio_furnissii_NCTC_11218 1
Vibrio_cholerae_O395 0
Psychromonas_ingrahamii_37 0
Shewanella_sp._MR-4 1
Shewanella_putrefaciens_CN-32 0
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 2
Marinomonas_sp._MWYL1 1
Halomonas_elongata_DSM_2581 2
Rhodanobacter_denitrificans 1
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_suwonensis_11-1 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Pectobacterium_atrosepticum_SCRI1043 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 2
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1
Klebsiella_oxytoca_E718 0
Enterobacter_cloacae_subsp._dissolvens_SDM 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2
Pseudomonas_syringae_pv._tomato_str._DC3000 2
Francisella_noatunensis_subsp._orientalis_str._Toba_04 1
Francisella_sp._TX077308 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1
Francisella_tularensis_subsp._tularensis_WY96-3418 0
Francisella_cf._novicida_3523 0
Francisella_novicida_U112 0
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Pyrolobus_fumarii_1A 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Methanosarcina_barkeri_str._Fusaro 0
Methanosphaerula_palustris_E1-9c 0
Ferroglobus_placidus_DSM_10642 1
Thermococcus_sibiricus_MM_739 1
Haloterrigena_turkmenica_DSM_5511 1
Halorubrum_lacusprofundi_ATCC_49239 0
Halomicrobium_mukohataei_DSM_12286 0
Halalkalicoccus_jeotgali_B3 1

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Strains
Genome     Number
Ajellomyces_dermatitidis_ER-3_ 2
Aspergillus_fumigatus_A1163_ 3
Schizosaccharomyces_pombe_972h-_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Dactylococcopsis_salina_PCC_8305 0
Prochlorococcus_marinus_str._MIT_9313 0
Mesoplasma_florum_W37 0
Spiroplasma_diminutum_CUAS-1 0
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 0
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Actinoplanes_friuliensis_DSM_7358 2
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Clavibacter_michiganensis_subsp._sepedonicus 0
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 0
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_F8 0
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Bifidobacterium_thermophilum_RBL67 0
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 0
Bifidobacterium_animalis_subsp._lactis_BB-12 0
Bifidobacterium_asteroides_PRL2011 3
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_viscosus_C505 0
Chthonomonas_calidirosea_T49 1
Eubacterium_siraeum_V10Sc8a 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Ruminococcus_champanellensis_18P13 0
Roseburia_intestinalis_XB6B4 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_E3_str._Alaska_E43 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Thermacetogenium_phaeum_DSM_12270 0
Melissococcus_plutonius_ATCC_35311 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Leuconostoc_gelidum_JB7 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_johnsonii_N6.2 0
Lactobacillus_johnsonii_DPC_6026 0
Lactobacillus_johnsonii_NCC_533 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_SD2112 0
Lactobacillus_plantarum_16 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_R6 0
Streptococcus_mutans_GS-5 0
Streptococcus_mutans_LJ23 0
Streptococcus_mutans_UA159 0
Streptococcus_salivarius_CCHSS3 0
Streptococcus_salivarius_JIM8777 0
Thermobacillus_composti_KWC4 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 3
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Amphibacillus_xylanus_NBRC_15112 2
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 0
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 0
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 0
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_amyloliquefaciens_CC178 0
Bacillus_amyloliquefaciens_Y2 0
Bacillus_amyloliquefaciens_IT-45 0
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_LL3 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_amyloliquefaciens_DSM_7 0
Bacillus_licheniformis_9945A 0
Bacillus_subtilis_PY79 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_QB928 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BAB-1 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 0
Bacillus_subtilis_subsp._subtilis_6051-HGW 0
Bacillus_subtilis_subsp._spizizenii_TU-B-10 0
Bacillus_subtilis_subsp._spizizenii_str._W23 0
Bacillus_subtilis_subsp._natto_BEST195 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 1
Bacillus_thuringiensis_MC28 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Rhodothermus_marinus_SG0.5JP17-172 2
Echinicola_vietnamensis_DSM_17526 7
Emticicia_oligotrophica_DSM_17448 3
Prevotella_dentalis_DSM_3688 2
Bacteroides_xylanisolvens_XB1A 8
Bacteroides_fragilis_638R 2
Bacteroides_fragilis_NCTC_9343 2
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Spirochaeta_thermophila_DSM_6578 2
Arcobacter_butzleri_7h1h 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Geobacter_sp._M18 0
Sorangium_cellulosum_So0157-2 4
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._KJ006 0
Burkholderia_pseudomallei_MSHR305 0
Burkholderia_pseudomallei_NCTC_13179 0
Burkholderia_pseudomallei_BPC006 0
Burkholderia_pseudomallei_1026b 0
Burkholderia_pseudomallei_668 0
Burkholderia_pseudomallei_1710b 0
Burkholderia_pseudomallei_K96243 0
Burkholderia_mallei_NCTC_10229 0
Burkholderia_mallei_NCTC_10247 0
Burkholderia_mallei_ATCC_23344 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Burkholderia_cepacia_GG4 0
Variovorax_paradoxus_B4 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Phaeobacter_gallaeciensis_DSM_26640 0
Leisingera_methylohalidivorans_DSM_14336 1
Rhodobacter_sphaeroides_ATCC_17025 1
Rhodospirillum_rubrum_ATCC_11170 1
Gluconacetobacter_diazotrophicus_PAl_5 0
Gluconobacter_oxydans_H24 0
Sinorhizobium_fredii_USDA_257 0
Sinorhizobium_fredii_HH103 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Mesorhizobium_australicum_WSM2073 1
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 2
Simiduia_agarivorans_SA1_=_DSM_21679 1
Vibrio_sp._EJY3 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_cholerae_LMA3984-4 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 1
Shewanella_baltica_OS223 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2
Klebsiella_oxytoca_KCTC_1686 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2
Pseudomonas_syringae_pv._phaseolicola_1448A 2
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_putida_W619 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Acinetobacter_baumannii_SDF 1
Francisella_noatunensis_subsp._orientalis_LADL--07-285A 1
Francisella_cf._novicida_Fx1 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Natronococcus_occultus_SP4 0

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   3

Others
Genome     Number
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
NCBI_plasmid_sequences_(Plasmids) 17
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 17
Protein_Data_Bank_(all_PDB_sequenc) 29
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 64
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 205
NCBI_viral_sequences_(Viral) 2
Uniprot_2018_03_genome 24558
NCBI_2017_08_genome 15031
PDB_chains_(SCOP_1.75)_(PDB) 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.