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Home > SCOP hierarchy > Domain combination - _gap_,81271,55186,55681,52954

Domain combinations for _gap_,81271,55186,55681,52954 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81271 - TGS-like
55186 - ThrRS/AlaRS common domain
55681 - Class II aaRS and biotin synthetases
52954 - Class II aaRS ABD-related

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 9

Pan_troglodytes_76_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_76_3.1 (Western gorilla) 4

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 3

Papio_anubis_76 (Olive baboon) 3

Macaca_mulatta_76_1 (Rhesus monkey) 4

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 5

Otolemur_garnettii_76_3 (Small-eared galago) 3

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 2

Mus_musculus_76_38 (House mouse) 5

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 3

Oryctolagus_cuniculus_76_2 (Rabbit) 2

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 3

Ovis_aries_76_3.1 (Sheep) 3

Vicugna_pacos_76_1 (Alpaca) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_76_1.0 (Domestic ferret) 3

Ailuropoda_melanoleuca_76_1 (Giant panda) 2

Canis_familiaris_76_3.1 (Dog) 3

Felis_catus_76_6.2 (Domestic cat) 3

Equus_caballus_76_2 (Horse) 2

Myotis_lucifugus_76_2.0 (Little brown bat) 3

Pteropus_vampyrus_76_1 (Large flying fox) 3

Sorex_araneus_76_1 (European shrew) 1

Erinaceus_europaeus_76 (Western European hedgehog) 2

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 2

Echinops_telfairi_76 (Small Madagascar hedgehog) 2

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 3

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 3

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Saccoglossus_kowalevskii_v3.0 2

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Meleagris_gallopavo_76_2 (Turkey) 2

Gallus_gallus_76_4 (Chicken) 3

Anas_platyrhynchos_76_1.0 (Mallard) 2

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 2

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 2

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_76_1 (Coelacanth) 4

Lepisosteus_oculatus_76 (Spotted gar) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 2

Takifugu_rubripes_76_4 (Torafugu) 6

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 6

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 2

Oikopleura_dioica 1

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 6

Adineta_vaga 2

Octopus_bimaculoides_280 2

Capitella_sp._I_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 3

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 1

Drosophila_persimilis_1.3 1

Drosophila_suzukii 1

Drosophila_yakuba_1.3 1

Drosophila_simulans_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 3

Drosophila_erecta_1.3 1

Drosophila_ananassae_1.3 1

Drosophila_virilis_1.2 1

Drosophila_mojavensis_1.3 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Daphnia_pulex_ (Common water flea) 1

Sarcoptes_scabiei 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Pristionchus_pacificus_ 1

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_japonica_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 4

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 1

Hymenolepis_microstoma_ 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Taenia_solium_ (Pork tapeworm) 1

Mnemiopsis_leidyi (Sea walnut) 1

Hydra_vulgaris 1

Amphimedon_queenslandica 1

Trichoplax_adhaerens_ 1

Proterospongia_sp._ATCC_50818_ 1

Capsaspora_owczarzaki_ATCC_30864_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 1

Mortierella_verticillata_NRRL_6337_ 3

Phycomyces_blakesleeanus_ 1

Rhizopus_oryzae_RA_99-880_ 1

Mucor_circinelloides_ 1

Rhizomucor_miehei_CAU432_ 1

Sporisorium_reilianum_22 1

Ustilago_maydis_ 1

Mixia_osmundae_IAM_14324_v1.0 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1

Microbotryum_violaceum_22 1

Wallemia_sebi_v1.0 1

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 1

Serpula_lacrymans_var._lacrymans_S7.9_ 1

Coniophora_puteana 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Laccaria_bicolor_S238N-H82_ 1

Agaricus_bisporus_var._bisporus_ 1

Schizophyllum_commune_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Heterobasidion_annosum_ 1

Gloeophyllum_trabeumv1.0 1

Punctularia_strigosozonata_v1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Fomitiporia_mediterranea_v1.0 1

Postia_placenta_ 2

Wolfiporia_cocos_MD-104_SS10__v1.0 1

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Dichomitus_squalens 1

Trametes_versicolor_v1.0 1

Tremella_mesenterica_ (Witches' butter) 1

Daldinia_eschscholzii_EC12_v1.0 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 1

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 1

Acremonium_alcalophilumv_1.0 1

Glomerella_graminicola_22 1

Fusarium_graminearum_ 1

Nectria_haematococca_mpVI_ 1

Fusarium_oxysporum_f._sp._lycopersici_4286_ 1

Fusarium_verticillioides_7600_ 1

Trichoderma_asperellum_CBS_433.97_v1.0 1

Trichoderma_atroviride_ 1

Trichoderma_citrinoviride_v1.0 1

Trichoderma_reesei_1.2 1

Trichoderma_virens_Gv29-8_ 1

Trichoderma_longibrachiatum_ATCC_18648_v1.0 1

Trichoderma_harzianum_CBS_226.95_v1.0 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 1

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Blumeria_graminis_22 1

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 1

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Alternaria_brassicicola_ 1

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Stagonospora_nodorum_ 1

Mycosphaerella_graminicola_IPO323_ 1

Mycosphaerella_fijiensis_CIRAD86_ 1

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 1

Aspergillus_zonatus_v1.0 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Penicillium_chrysogenum_v1.0 1

Aspergillus_acidus_v1.0 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Aspergillus_terreus_NIH2624_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_wentii_v1.0 1

Aspergillus_oryzae_RIB40_ 1

Aspergillus_niger_22 1

Aspergillus_flavus_NRRL3357_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Hansenula_polymorpha_v2.0 1

Dekkera_bruxellensis_CBS_2499_v2.0 1

Pichia_membranifaciensv1.0 1

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_dubliniensis_CD36_ 1

Candida_albicans_SC5314 1

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Babjeviella_inositovora_NRRL_Y-12698_v1.0 1

Pichia_stipitis_CBS_6054_ 1

Candida_guilliermondii_ATCC_6260_ 1

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1

Debaromyces_hansenii 1

Wickerhamomyces_anomalus 1

Pichia_pastoris_GS115_ 1

Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1

Yarrowia_lipolytica_CLIB122 1

Candida_lusitaniae_ATCC_42720_ 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Vanderwaltozyma_polyspora_DSM_70294_ 1

Candida_glabrata_CBS138 1

Kluyveromyces_thermotolerans_CBS_6340 1

Lachancea_kluyveri_ 1

Kluyveromyces_waltii 1

Ashbya_gossypii_ATCC_10895_ 1

Zygosaccharomyces_rouxii_ 1

Saccharomyces_mikatae_MIT 1

Saccharomyces_cerevisiae_76 (Baker's yeast) 1

Saccharomyces_bayanus_MIT 1

Kluyveromyces_lactis 1

Schizosaccharomyces_cryophilus_OY26_22 1

Schizosaccharomyces_octosporus_yFS286_ 1

Schizosaccharomyces_japonicus_yFS275_ 1

Schizosaccharomyces_pombe (Fission yeast) 1

Catenaria_anguillulae_PL171_v1.0 1

Allomyces_macrogynus_ATCC_38327_ 2

Spizellomyces_punctatus_DAOM_BR117_ 1

Dictyostelium_discoideum 1

Dictyostelium_purpureum_ 1

Pinus_taeda (Loblolly pine) 1

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 1

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 2

Thellungiella_halophila_v173 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 3

Capsella_rubella_v183 2

Arabidopsis_lyrata_ (Lyrate rockcress) 2

Arabidopsis_thaliana_10 (Thale cress) 2

Medicago_truncatula_ (Barrel medic) 1

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 2

Fragaria_vesca_ (Wild strawberry) 3

Malus_domestica_v196 (Apple) 3

Prunus_persica_v139 (Peach) 2

Linum_usitatissimum_v200 (Flax) 2

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 2

Vitis_vinifera_ (Wine grape) 2

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Solanum_lycopersicum_v.2.3 (Tomato) 2

Actinidia_chinensis_Hongyang_ 0

Aquilegia_coerulea_v195 5

Triticum_urartu_22 0

Triticum_aestivum_22 (Bread wheat) 1

Aegilops_tauschii_22 0

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 1

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Amborella_trichopoda_22 1

Physcomitrella_patens 1

Coccomyxa_subellipsoidea_sp._C-169_v2 0

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Chlorella_vulgaris_ 1

Volvox_carteri_f._nagariensis_ 1

Volvox_carteri_v199 1

Chlamydomonas_reinhardtii_4.0 1

Ostreococcus_sp._RCC809_ 1

Ostreococcus_lucimarinus_CCE9901_ 1

Ostreococcus_tauri_ 1

Bathycoccus_prasinos_ 1

Micromonas_sp._RCC299_ 1

Micromonas_pusilla_CCMP1545_v3.0 1

Cyanidioschyzon_merolae_strain_10D_22 1

Cyanidioschyzon_merolae 1

Porphyridium_purpureum_02_2012 1

Thecamonas_trahens_ATCC_50062_ 1

Ectocarpus_siliculosus 1

Aureococcus_anophagefferens_ 1

Pythium_ultimum_v1.7-2 1

Pythium_aphanidermatum_DAOM_BR444_22 1

Pythium_irregulare_DAOM_BR486_22 1

Phytophthora_ramorum_1.1 (Sudden oak death agent) 1

Phytophthora_sojae_1.1 1

Phytophthora_infestans_T30-4_ 1

Hyaloperonospora_arabidopsidis_22 0

Phaeodactylum_tricornutumCCAP_1055/1 1

Perkinsus_marinus_ATCC_50983_ 1

Guillardia_theta_CCMP2712_v1.0_ 2

Emiliania_huxleyi_CCMP1516_ 1

Acidaminococcus_intestini_RyC-MR95 1

Fibrobacter_succinogenes_subsp._succinogenes_S85 1

Comamonas_testosteroni_CNB-2 1

Bradyrhizobium_japonicum_USDA_110 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 3

Pan_troglodytes_69_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 3

Macaca_mulatta_69_1 (Rhesus monkey) 2

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 3

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 3

Mus_musculus_69_38 (House mouse) 3

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 3

Oryctolagus_cuniculus_69_2 (Rabbit) 3

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 3

Vicugna_pacos_69_1 (Alpaca) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 3

Ailuropoda_melanoleuca_69_1 (Giant panda) 2

Canis_familiaris_69_3.1 (Dog) 3

Equus_caballus_69_2 (Horse) 2

Myotis_lucifugus_69_2.0 (Little brown bat) 3

Pteropus_vampyrus_69_1 (Large flying fox) 3

Sorex_araneus_69_1 (European shrew) 1

Erinaceus_europaeus_69 (Western European hedgehog) 2

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 2

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 2

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 3

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 2

Gallus_gallus_69_2 (Chicken) 2

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 3

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 1

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1

Drosophila_melanogaster_69_5 (Fruit fly) 1

Caenorhabditis_elegans_69_215 (Roundworm) 1

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 1

Arabidopsis_thaliana_10 (Thale cress) 2

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 8

Homo_sapiens__(NCBI_version) (Human) 3

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 3

Loa_loa_v3.3_(Request) (Eye worm) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Lotus_japonicus__(Early_assembly) 1

Malus_x_domestica_(Duplicate) (Apple) 3

Ricinus_communis__(Early_assembly) (Castor bean) 1

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 2

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 2

Core_Eukaryotic_Genes_458_(CEGMA) 6

STRING_v9.0.5_(STRING) 125

NCBI_2017_08_genome 1482

Uniprot_2018_03_genome 22200

TargetDB__(Targets) 5

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Domain combinations for _gap_,81271,55186,55681,52954 superfamilies in groups of genomes