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Domain combinations for _gap_,81383,52047,52047 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
52047 - RNI-like
52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Mus_musculus_76_38   (House mouse)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Bos_taurus_76_3.1   (Cattle)   1
Vicugna_pacos_76_1   (Alpaca)   1
Equus_caballus_76_2   (Horse)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Adineta_vaga 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Drosophila_persimilis_1.3 1
Drosophila_simulans_1.3 1
Drosophila_erecta_1.3 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Hydra_vulgaris 1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 2
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Piloderma_croceum_F_1598_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 1
Amanita_thiersii_Skay4041_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Agaricus_bisporus_var._bisporus_ 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Dichomitus_squalens 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Trichoderma_atroviride_ 0
Trichoderma_virens_Gv29-8_ 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   1
Eucalyptus_grandis_v201   (Rose gum)   4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 9
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   5
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   8
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   9
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   7
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 4
Aquilegia_coerulea_v195 5
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   2
Oryza_nivara_22 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3
Oryza_sativa_v193   (Rice)   3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   2
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Thecamonas_trahens_ATCC_50062_ 0
Naegleria_gruberi_ 2
Candidatus_Amoebophilus_asiaticus_5a2 3
Candidatus_Protochlamydia_amoebophila_UWE25 1
Ralstonia_solanacearum_CFBP2957 1

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Coccidioides_posadasii_str._Silveira_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 2

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Equus_caballus_69_2   (Horse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Arabidopsis_thaliana_10   (Thale cress)   4

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 40
Uniprot_2018_03_genome 4968
NCBI_2017_08_genome 648

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