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  Home > SCOP hierarchy > Domain combination - _gap_,81383,_gap_

Domain combinations for _gap_,81383,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_76_3.1   (Western gorilla)   9
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   9
Macaca_mulatta_76_1   (Rhesus monkey)   14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_76_3   (Small-eared galago)   11
Microcebus_murinus_76_1   (Gray mouse lemur)   7
Rattus_norvegicus_76_5.0   (Norway rat)   7
Mus_musculus_76_38   (House mouse)   12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   8
Oryctolagus_cuniculus_76_2   (Rabbit)   9
Ochotona_princeps_76   (American pika)   7
Tupaia_belangeri_76   (Northern tree shrew)   3
Sus_scrofa_76_10.2   (Pig)   7
Bos_taurus_76_3.1   (Cattle)   9
Ovis_aries_76_3.1   (Sheep)   6
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   15
Felis_catus_76_6.2   (Domestic cat)   6
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   48
Pteropus_vampyrus_76_1   (Large flying fox)   9
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   7
Loxodonta_africana_76_3   (African savanna elephant)   11
Echinops_telfairi_76   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_76_5   (Platypus)   5
Saccoglossus_kowalevskii_v3.0 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   6
Gallus_gallus_76_4   (Chicken)   9
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   12
Xenopus_laevis_   (African clawed frog)   19
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   8
Lepisosteus_oculatus_76   (Spotted gar)   12
Gadus_morhua_76_1   (Atlantic cod)   9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   12
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   7
Danio_rerio_76_9   (Zebrafish)   14
Oikopleura_dioica 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 22
Octopus_bimaculoides_280 5
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 4
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 4
Drosophila_suzukii 2
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   8
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   8
Strigamia_maritima_22 4
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 9
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 44
Caenorhabditis_remanei_ 36
Caenorhabditis_elegans_76_235   (Roundworm)   18
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 4
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 7
Mnemiopsis_leidyi   (Sea walnut)   5
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 3
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 6
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 6
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 11
Phycomyces_blakesleeanus_ 9
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 4
Rhizomucor_miehei_CAU432_ 3
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 3
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 16
Sporobolomyces_roseus_IAM_13481_ 9
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 20
Piloderma_croceum_F_1598_v1.0 12
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 18
Hydnomerulius_pinastri_v2.0 7
Paxillus_rubicundulus_Ve08.2h10_v1.0 8
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 11
Scleroderma_citrinum_Foug_A_v1.0 23
Coprinopsis_cinerea_okayama7_130_v3 32
Pleurotus_ostreatus_   (Oyster mushroom)   11
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   15
Galerina_marginata_v1.0 60
Hebeloma_cylindrosporum_h7_v2.0 42
Laccaria_bicolor_S238N-H82_ 23
Agaricus_bisporus_var._bisporus_ 13
Schizophyllum_commune_ 75
Stereum_hirsutum_FP-91666_SS1__v1.0 29
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 12
Punctularia_strigosozonata_v1.0 11
Sebacina_vermifera_MAFF_305830_v1.0 64
Fomitiporia_mediterranea_v1.0 8
Tulasnella_calospora_AL13/4D_v1.0 64
Postia_placenta_ 33
Wolfiporia_cocos_MD-104_SS10__v1.0 19
Fomitopsis_pinicolav1.0 18
Fomitopsis_pinicola_FP-58527_SS1_v3.0 20
Phanerochaete_chrysosporium_RP-78_2.1 18
Dichomitus_squalens 16
Trametes_versicolor_v1.0 36
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 9
Apiospora_montagnei_NRRL_25634_v1.0 11
Magnaporthe_poae_ATCC_64411_22 7
Magnaporthe_grisea_70-15_ 11
Podospora_anserina_ 10
Sporotrichum_thermophile_ATCC_42464_ 11
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 9
Neurospora_tetrasperma_ 7
Neurospora_discreta_FGSC_8579_ 10
Neurospora_crassa_OR74A_ 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   8
Verticillium_albo-atrum_VaMs.102_ 5
Verticillium_dahliae_VdLs.17_ 9
Acremonium_alcalophilumv_1.0 10
Glomerella_graminicola_22 9
Fusarium_graminearum_ 9
Nectria_haematococca_mpVI_ 21
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8
Fusarium_verticillioides_7600_ 9
Trichoderma_asperellum_CBS_433.97_v1.0 16
Trichoderma_atroviride_ 10
Trichoderma_citrinoviride_v1.0 8
Trichoderma_reesei_1.2 7
Trichoderma_virens_Gv29-8_ 9
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   9
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 13
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 7
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 9
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 9
Pyrenophora_teres_f._teres_22 9
Pyrenophora_tritici-repentis_ 11
Stagonospora_nodorum_ 11
Mycosphaerella_graminicola_IPO323_ 17
Zasmidium_cellare_ATCC_36951_v1.0 20
Dothistroma_septosporum 7
Septoria_musiva_v1.0 9
Mycosphaerella_fijiensis_CIRAD86_ 13
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6
Paracoccidioides_brasiliensis_Pb18_ 7
Coccidioides_posadasii_RMSCC_3488_ 8
Coccidioides_immitis_RS_ 11
Ajellomyces_dermatitidis_SLH14081_ 8
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 8
Microsporum_canis_CBS_113480_ 8
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 8
Arthroderma_benhamiae_CBS_112371_ 9
Trichophyton_tonsurans_CBS_112818_ 6
Trichophyton_rubrum_CBS_118892_ 8
Uncinocarpus_reesii_1704_ 5
Aspergillus_zonatus_v1.0 9
Penicillium_chrysogenum_Wisconsin_54-1255_ 12
Penicillium_chrysogenum_v1.0 11
Aspergillus_acidus_v1.0 8
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 11
Aspergillus_nidulans_FGSC_A4_ 7
Aspergillus_sydowii_v1.0 16
Aspergillus_versicolor_v1.0 11
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 8
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 9
Aspergillus_tubingensis_v1.0 7
Aspergillus_wentii_v1.0 12
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 9
Aspergillus_niger_ATCC_1015_ 8
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 6
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   5
Dekkera_bruxellensis_CBS_2499_v2.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 1
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 10
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 9
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 9
Dictyostelium_discoideum 7
Dictyostelium_purpureum_ 8
Selaginella_moellendorffii_ 32
Pinus_taeda   (Loblolly pine)   10
Picea_abies   (Norway spruce)   12
Eucalyptus_grandis_v201   (Rose gum)   15
Theobroma_cacao_B97-61/B2_v1   (Cacao)   19
Gossypium_raimondii_v221 33
Citrus_clementina_v165 16
Citrus_sinensis_v154   (Sweet orange)   15
Thellungiella_halophila_v173 20
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   25
Capsella_rubella_v183 28
Arabidopsis_lyrata_   (Lyrate rockcress)   33
Arabidopsis_thaliana_10   (Thale cress)   32
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   53
Phaseolus_vulgaris_v186   (French bean)   15
Glycine_max_v109   (Soybean)   21
Cucumis_sativus_v122   (Cucumber)   9
Fragaria_vesca_   (Wild strawberry)   74
Malus_domestica_v196   (Apple)   65
Prunus_persica_v139   (Peach)   23
Linum_usitatissimum_v200   (Flax)   30
Manihot_esculenta_v147   (Cassava)   14
Populus_trichocarpa_v156   (Black cottonwood)   19
Vitis_vinifera_   (Wine grape)   13
Mimulus_guttatus_v140   (Spotted monkey flower)   21
Solanum_lycopersicum_v.2.3   (Tomato)   18
Solanum_tuberosum_   (Potato)   30
Actinidia_chinensis_Hongyang_ 24
Aquilegia_coerulea_v195 37
Triticum_urartu_22 51
Triticum_aestivum_22   (Bread wheat)   51
Aegilops_tauschii_22 134
Brachypodium_distachyon_   (Stiff brome)   55
Oryza_barthii_22   (African wild rice)   56
Oryza_meridionalis_22 49
Oryza_glumaepatula_22 88
Oryza_glaberrima   (African rice)   37
Oryza_punctata_22 56
Oryza_nivara_22 62
Oryza_brachyantha_22   (Malo sina)   15
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   59
Oryza_sativa_v193   (Rice)   59
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18
Panicum_virgatum_v202   (Switchgrass)   63
Setaria_italica_v164   (Foxtail millet)   45
Zea_mays_subsp._mays_   (Maize)   28
Zea_mays_v181   (Maize)   29
Sorghum_bicolor_   (Sorghum)   40
Musa_balbisiana   (Balbis banana)   18
Musa_acuminata_22   (Wild Malaysian banana)   16
Amborella_trichopoda_22 11
Physcomitrella_patens 26
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 4
Volvox_carteri_v199 4
Chlamydomonas_reinhardtii_4.0 7
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 5
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 6
Thecamonas_trahens_ATCC_50062_ 14
Bigelowiella_natans_CCMP2755_22 14
Cyanophora_paradoxa_ 35
Leishmania_mexicana_2.4 5
Leishmania_major_strain_Friedlin_ 5
Leishmania_infantum_JPCM5_2.4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 7
Trypanosoma_congolense_2.4 4
Trypanosoma_brucei_gambiense_v4.1 8
Trypanosoma_brucei_TREU927_v4.1 5
Ectocarpus_siliculosus 8
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 4
Phytophthora_infestans_T30-4_ 5
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 5
Phaeodactylum_tricornutumCCAP_1055/1 4
Fragilariopsis_cylindrus 17
Thalassiosira_pseudonana_CCMP1335 6
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 3
Cryptosporidium_muris 0
Neospora_caninum 3
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 2
Plasmodium_falciparum_3D7_ 1
Plasmodium_knowlesi_strain_H_ 1
Symbiodinium_minutum_clade_B1_v1.2 8
Naegleria_gruberi_ 48
Guillardia_theta_CCMP2712_v1.0_ 5
Emiliania_huxleyi_CCMP1516_ 8
Candidatus_Amoebophilus_asiaticus_5a2 0
Parachlamydia_acanthamoebae_UV-7 5
Burkholderia_rhizoxinica_HKI_454 6
Coxiella_burnetii_Dugway_5J108-111 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   15
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   18
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 5
Paracoccidioides_brasiliensis_Pb03_ 5
Coccidioides_posadasii_str._Silveira_ 9
Coccidioides_immitis_RMSCC_3703_ 4
Coccidioides_immitis_RMSCC_2394_ 9
Coccidioides_immitis_H538.4_ 7
Ajellomyces_dermatitidis_ER-3_ 8
Histoplasma_capsulatum_H143 8
Histoplasma_capsulatum_H88 8
Histoplasma_capsulatum_G186AR 9
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 2
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   17
Hordeum_vulgare_22   (Domesticated barley)   43
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   56
Trypanosoma_brucei_Lister_427_v4.1 7
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_69_3.1   (Western gorilla)   7
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   10
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10
Otolemur_garnettii_69_3   (Small-eared galago)   10
Microcebus_murinus_69_1   (Gray mouse lemur)   7
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   9
Ochotona_princeps_69   (American pika)   7
Tupaia_belangeri_69   (Northern tree shrew)   3
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   12
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   45
Pteropus_vampyrus_69_1   (Large flying fox)   9
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   7
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   5
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   5
Gallus_gallus_69_2   (Chicken)   9
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   19
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   27

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   18
Homo_sapiens__(NCBI_version)   (Human)   13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 7
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 15
Malus_x_domestica_(Duplicate)   (Apple)   65
Ricinus_communis__(Early_assembly)   (Castor bean)   9
Nicotiana_benthamiana_0.4.4_(Early_draft) 35
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   18
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
NCBI_plasmid_sequences_(Plasmids) 1
Protozoadb_2010_08_(Protozoadb) 48
TargetDB__(Targets) 25
NCBI_viral_sequences_(Viral) 27
STRING_v9.0.5_(STRING) 921
NCBI_2017_08_genome 9430
Uniprot_2018_03_genome 67760

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.