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  Home > SCOP hierarchy > Domain combination - _gap_,81901,48452,56935

Domain combinations for _gap_,81901,48452,56935 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81901 - HCP-like
48452 - TPR-like
56935 - Porins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rhizobium_etli_CIAT_652 1
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_oceani_ATCC_19707 1

Strains
Genome     Number
Nitrosomonas_sp._AL212 2
Mannheimia_succiniciproducens_MBEL55E 1

Others
Genome     Number
NCBI_2017_08_genome 35
Uniprot_2018_03_genome 400
STRING_v9.0.5_(STRING) 3

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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