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  Home > SCOP hierarchy > Domain combination - _gap_,81995,53300,_gap_,81811,82754

Domain combinations for _gap_,81995,53300,_gap_,81811,82754 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81995 - beta-sandwich domain of Sec23/24
53300 - vWA-like
81811 - Helical domain of Sec23/24
82754 - C-terminal, gelsolin-like domain of Sec23/24

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Capsaspora_owczarzaki_ATCC_30864_ 1

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Felis_catus_69   (Domestic cat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Gadus_morhua_69_1   (Atlantic cod)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 720
NCBI_2017_08_genome 76

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.