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Domain combinations for _gap_,81995,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81995 - beta-sandwich domain of Sec23/24

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   2
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   1
Takifugu_rubripes_76_4   (Torafugu)   3
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 2
Octopus_bimaculoides_280 4
Helobdella_robusta_ 14
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 9
Drosophila_pseudoobscura_2.13 3
Drosophila_persimilis_1.3 5
Drosophila_suzukii 2
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   10
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   4
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 2
Pristionchus_pacificus_ 3
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_remanei_ 0
Trichinella_spiralis_22 0
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 37
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 7
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Microbotryum_violaceum_22 1
Coniophora_puteana 1
Coprinopsis_cinerea_okayama7_130_v3 1
Hebeloma_cylindrosporum_h7_v2.0 1
Agaricus_bisporus_var._bisporus_ 1
Gloeophyllum_trabeumv1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Nectria_haematococca_mpVI_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_reesei_1.2 1
Botrytis_cinerea_B05.10_ 1
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Paracoccidioides_brasiliensis_Pb18_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Aspergillus_zonatus_v1.0 0
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 1
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 0
Zygosaccharomyces_rouxii_ 2
Saccharomyces_paradoxus_MIT 0
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 1
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 0
Dictyostelium_discoideum 39
Dictyostelium_purpureum_ 4
Selaginella_moellendorffii_ 0
Picea_abies   (Norway spruce)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Phaseolus_vulgaris_v186   (French bean)   2
Populus_trichocarpa_v156   (Black cottonwood)   2
Aquilegia_coerulea_v195 1
Aegilops_tauschii_22 1
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 1
Oryza_punctata_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Setaria_italica_v164   (Foxtail millet)   0
Physcomitrella_patens 1
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 8
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 0
Trypanosoma_cruzi_strain_CL_Brener 2
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_sojae_1.1 1
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 1
Ichthyophthirius_multifiliis_strain_G5_ 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 5
Guillardia_theta_CCMP2712_v1.0_ 4
Emiliania_huxleyi_CCMP1516_ 5
Streptomyces_violaceusniger_Tu_4113 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Gordonia_polyisoprenivorans_VH2 1
Beutenbergia_cavernae_DSM_12333 1
Cellulomonas_fimi_ATCC_484 1
Halorubrum_lacusprofundi_ATCC_49239 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Plasmodium_falciparum_HB3_ 1
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7822 0
Mycoplasma_hyopneumoniae_168-L 1
Mycoplasma_hyopneumoniae_7422 1
Mycoplasma_hyopneumoniae_232 1
Mycoplasma_hyopneumoniae_J 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   2
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   2
Takifugu_rubripes_69_4   (Torafugu)   1
Danio_rerio_69_9   (Zebrafish)   1
Drosophila_melanogaster_69_5   (Fruit fly)   7
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   2
Lotus_japonicus__(Early_assembly) 1
Uniprot_2018_03_genome 8145
NCBI_2017_08_genome 1983
NCBI_viral_sequences_(Viral) 7
Protozoadb_2010_08_(Protozoadb) 10
TargetDB__(Targets) 1
UniProt__viral_sequences_(Viral) 5
STRING_v9.0.5_(STRING) 178

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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