SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,82671,_gap_,49854,57424,57424,57424,57424,50494 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

82671 - SEA domain
49854 - Spermadhesin, CUB domain
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
50494 - Trypsin-like serine proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Bos_taurus_76_3.1   (Cattle)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Bos_taurus_69_3.1   (Cattle)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1

Others
Genome     Number
Uniprot_2018_03_genome 35
NCBI_2017_08_genome 2

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