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Home > SCOP hierarchy > Domain combination - _gap_,82895,_gap_,82895,82895,82895,82895,_gap_

Domain combinations for _gap_,82895,_gap_,82895,82895,82895,82895,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat
82895 - TSP-1 type 1 repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 3

Gorilla_gorilla_76_3.1 (Western gorilla) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 1

Macaca_mulatta_76_1 (Rhesus monkey) 1

Rattus_norvegicus_76_5.0 (Norway rat) 0

Mus_musculus_76_38 (House mouse) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 0

Oryctolagus_cuniculus_76_2 (Rabbit) 0

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 0

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 0

Procavia_capensis_76_1 (Cape rock hyrax) 0

Loxodonta_africana_76_3 (African savanna elephant) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 0

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 0

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_76_1 (Coelacanth) 0

Takifugu_rubripes_76_4 (Torafugu) 1

Oryzias_latipes_76_1 (Japanese medaka) 0

Poecilia_formosa_76 (Amazon molly) 1

Oreochromis_niloticus_76_1.0 (Nile tilapia) 2

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 2

Helobdella_robusta_ 0

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 0

Drosophila_mojavensis_1.3 0

Rhodnius_prolixus_22 0

Pythium_iwayamai_DAOM_BR242034_22 0

Pythium_ultimum_v1.7-2 0

Pythium_irregulare_DAOM_BR486_22 0

Phytophthora_ramorum_1.1 (Sudden oak death agent) 0

Phytophthora_infestans_T30-4_ 0

Phytophthora_capsici_ 0

Cryptosporidium_muris 1

Symbiodinium_minutum_clade_B1_v1.2 0

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 0

Bos_taurus_69_3.1 (Cattle) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 0

Loxodonta_africana_69_3 (African savanna elephant) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 0

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 0

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 0

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 2

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 1

Latimeria_chalumnae_69_1 (Coelacanth) 0

Takifugu_rubripes_69_4 (Torafugu) 1

Oryzias_latipes_69_1 (Japanese medaka) 0

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 2

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 3

Homo_sapiens__(NCBI_version) (Human) 1

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Protozoadb_2010_08_(Protozoadb) 2

STRING_v9.0.5_(STRING) 13

Uniprot_2018_03_genome 3175

NCBI_2017_08_genome 393

TargetDB__(Targets) 1

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Domain combinations for _gap_,82895,_gap_,82895,82895,82895,82895,_gap_ superfamilies in groups of genomes