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Domain combinations for _gap_,88659,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Hydra_vulgaris 0
Tremella_mesenterica_   (Witches' butter)   1
Physcomitrella_patens 1
Chlorella_variabilis_sp._NC64A_ 1
Micromonas_sp._RCC299_ 0
Phytophthora_capsici_ 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Thermosynechococcus_elongatus_BP-1 0
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Gloeobacter_violaceus_PCC_7421 3
Calothrix_sp._PCC_7507 1
Nostoc_sp._PCC_7120 0
Conexibacter_woesei_DSM_14684 1
Thermobispora_bispora_DSM_43833 2
Modestobacter_marinus 2
Geodermatophilus_obscurus_DSM_43160 1
Streptosporangium_roseum_DSM_43021 1
Streptomyces_violaceusniger_Tu_4113 1
Nocardioides_sp._JS614 1
Rhodococcus_erythropolis_PR4 1
Nocardia_farcinica_IFM_10152 1
Mycobacterium_gilvum_PYR-GCK 1
Corynebacterium_resistens_DSM_45100 0
Corynebacterium_kroppenstedtii_DSM_44385 1
Microbacterium_testaceum_StLB037 1
Bifidobacterium_dentium_Bd1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Thermaerobacter_marianensis_DSM_12885 1
Oscillibacter_valericigenes_Sjm18-20 1
Clostridium_sticklandii_DSM_519 0
Butyrivibrio_proteoclasticus_B316 0
Alkaliphilus_metalliredigens_QYMF 0
Acetohalobium_arabaticum_DSM_5501 1
Pediococcus_claussenii_ATCC_BAA-344 1
Pediococcus_pentosaceus_ATCC_25745 1
Geobacillus_sp._WCH70 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_anthracis_str._A0248 0
Bacillus_pseudofirmus_OF4 1
Bacillus_cellulosilyticus_DSM_2522 1
Chitinophaga_pinensis_DSM_2588 1
Leadbetterella_byssophila_DSM_17132 1
Prevotella_denticola_F0289 0
Planctomyces_brasiliensis_DSM_5305 1
Desulfurispirillum_indicum_S5 1
Denitrovibrio_acetiphilus_DSM_12809 1
Candidatus_Koribacter_versatilis_Ellin345 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 0
Geobacter_lovleyi_SZ 1
Pelobacter_propionicus_DSM_2379 2
Sorangium_cellulosum_'So_ce_56' 3
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_fulvus_HW-1 2
Roseobacter_denitrificans_OCh_114 1
Acidiphilium_cryptum_JF-5 1
Polymorphum_gilvum_SL003B-26A1 0
Methylobacterium_extorquens_AM1 0
Ochrobactrum_anthropi_ATCC_49188 0
Haemophilus_ducreyi_35000HP 1
Tolumonas_auensis_DSM_9187 1
Methylomicrobium_alcaliphilum 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Sulfolobus_solfataricus_P2 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosarcina_mazei_Go1 1
Ferroglobus_placidus_DSM_10642 1
Methanotorris_igneus_Kol_5 1

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Strains
Genome     Number
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Oscillatoria_nigro-viridis_PCC_7112 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Anabaena_cylindrica_PCC_7122 2
Candidatus_Mycoplasma_haemominutum_'Birmingham_1' 0
Gordonibacter_pamelaeae_7-10-1-b 1
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_venezuelae_ATCC_10712 1
Saccharothrix_espanaensis_DSM_44229 1
Propionibacterium_avidum_44067 1
Propionibacterium_acidipropionici_ATCC_4875 0
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_liflandii_128FXT 1
Corynebacterium_maris_DSM_45190 1
Thermus_thermophilus_JL-18 1
Thermus_thermophilus_SG0.5JP17-16 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Coprococcus_catus_GD/7 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_thuringiensis_HD-771 1
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 2
Burkholderia_phenoliruptrix_BR3459a 0
Burkholderia_sp._YI23 2
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_P12b 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 16
TargetDB__(Targets) 1
Protozoadb_2010_08_(Protozoadb) 10
STRING_v9.0.5_(STRING) 34
Uniprot_2018_03_genome 6370
NCBI_2017_08_genome 2782

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