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Home > SCOP hierarchy > Domain combination - _gap_,88697,_gap_,52540,54211

Domain combinations for _gap_,88697,_gap_,52540,54211 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

88697 - PUA domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
54211 - Ribosomal protein S5 domain 2-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 4

Pan_troglodytes_76_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 2

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 2

Macaca_mulatta_76_1 (Rhesus monkey) 2

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 4

Otolemur_garnettii_76_3 (Small-eared galago) 2

Rattus_norvegicus_76_5.0 (Norway rat) 2

Mus_musculus_76_38 (House mouse) 2

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 2

Ovis_aries_76_3.1 (Sheep) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_76_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 1

Felis_catus_76_6.2 (Domestic cat) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 2

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 3

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Saccoglossus_kowalevskii_v3.0 1

Gallus_gallus_76_4 (Chicken) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 3

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 2

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 1

Takifugu_rubripes_76_4 (Torafugu) 4

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 2

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 3

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1

Crassostrea_gigas_22 (Pacific oyster) 2

Lottia_gigantea_ (Owl limpet) 1

Helobdella_robusta_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 0

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 1

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 0

Drosophila_persimilis_1.3 0

Drosophila_virilis_1.2 1

Megaselia_scalaris_22 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Strigamia_maritima_22 1

Sarcoptes_scabiei 0

Tetranychus_urticae_ (Two-spotted spider mite) 2

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Meloidogyne_incognita_ (Southern root-knot nematode) 3

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_japonica_ 1

Caenorhabditis_brenneri_ 2

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 1

Trichinella_spiralis_22 1

Acropora_digitifera_v1.0 1

Trichoplax_adhaerens_ 1

Proterospongia_sp._ATCC_50818_ 1

Mortierella_verticillata_NRRL_6337_ 1

Phycomyces_blakesleeanus_ 1

Rhizopus_oryzae_RA_99-880_ 3

Mucor_circinelloides_ 1

Rhizomucor_miehei_CAU432_ 3

Sporisorium_reilianum_22 0

Mixia_osmundae_IAM_14324_v1.0 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Microbotryum_violaceum_22 2

Sphaerobolus_stellatus_v1.0 0

Scleroderma_citrinum_Foug_A_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Gloeophyllum_trabeumv1.0 1

Daldinia_eschscholzii_EC12_v1.0 2

Apiospora_montagnei_NRRL_25634_v1.0 2

Magnaporthe_poae_ATCC_64411_22 2

Magnaporthe_grisea_70-15_ 2

Sporotrichum_thermophile_ATCC_42464_ 0

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 1

Neurospora_tetrasperma_ 2

Neurospora_discreta_FGSC_8579_ 2

Neurospora_crassa_OR74A_ 2

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 2

Acremonium_alcalophilumv_1.0 2

Glomerella_graminicola_22 1

Fusarium_graminearum_ 2

Nectria_haematococca_mpVI_ 2

Fusarium_oxysporum_f._sp._lycopersici_4286_ 2

Fusarium_verticillioides_7600_ 2

Trichoderma_asperellum_CBS_433.97_v1.0 2

Trichoderma_atroviride_ 2

Trichoderma_citrinoviride_v1.0 2

Trichoderma_reesei_1.2 2

Trichoderma_virens_Gv29-8_ 2

Trichoderma_longibrachiatum_ATCC_18648_v1.0 1

Trichoderma_harzianum_CBS_226.95_v1.0 2

Amorphotheca_resinae_v1.0 (Creosote fungus) 2

Botrytis_cinerea_B05.10_ 2

Sclerotinia_sclerotiorum_ 1

Blumeria_graminis_22 2

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 1

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 1

Alternaria_brassicicola_ 1

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Pyrenophora_tritici-repentis_ 2

Stagonospora_nodorum_ 1

Mycosphaerella_graminicola_IPO323_ 2

Zasmidium_cellare_ATCC_36951_v1.0 2

Dothistroma_septosporum 1

Septoria_musiva_v1.0 2

Mycosphaerella_fijiensis_CIRAD86_ 2

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 2

Coccidioides_immitis_RS_ 2

Ajellomyces_dermatitidis_SLH14081_ 2

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 2

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_verrucosum_HKI_0517_ 2

Arthroderma_benhamiae_CBS_112371_ 2

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 2

Aspergillus_zonatus_v1.0 2

Penicillium_chrysogenum_Wisconsin_54-1255_ 2

Penicillium_chrysogenum_v1.0 2

Aspergillus_acidus_v1.0 2

Aspergillus_fumigatus_Af293 2

Aspergillus_brasiliensis_v1.0 2

Aspergillus_nidulans_FGSC_A4_ 2

Aspergillus_sydowii_v1.0 2

Aspergillus_versicolor_v1.0 2

Aspergillus_glaucus 2

Aspergillus_carbonarius_ITEM_5010_ 2

Neosartorya_fischeri_NRRL_181_ 2

Aspergillus_terreus_NIH2624_ 2

Aspergillus_tubingensis_v1.0 2

Aspergillus_wentii_v1.0 2

Aspergillus_oryzae_RIB40_ 2

Aspergillus_niger_22 2

Aspergillus_niger_ATCC_1015_ 1

Aspergillus_flavus_NRRL3357_ 2

Aspergillus_clavatus_NRRL_1_ 2

Penicillium_marneffei_ATCC_18224_ 3

Tuber_melanosporum_Mel28_22 2

Tuber_melanosporum_Vittad_ (Perigord truffle) 2

Hansenula_polymorpha_v2.0 1

Candida_tropicalis_MYA-3404_ 1

Pichia_pastoris_GS115_ 1

Yarrowia_lipolytica_CLIB122 2

Lachancea_kluyveri_ 1

Ashbya_gossypii_ATCC_10895_ 1

Saccharomyces_cerevisiae_76 (Baker's yeast) 1

Kluyveromyces_lactis 1

Allomyces_macrogynus_ATCC_38327_ 0

Spizellomyces_punctatus_DAOM_BR117_ 2

Selaginella_moellendorffii_ 2

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 8

Citrus_clementina_v165 2

Thellungiella_halophila_v173 2

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 3

Capsella_rubella_v183 2

Arabidopsis_lyrata_ (Lyrate rockcress) 3

Arabidopsis_thaliana_10 (Thale cress) 2

Medicago_truncatula_ (Barrel medic) 2

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 3

Cucumis_sativus_v122 (Cucumber) 2

Fragaria_vesca_ (Wild strawberry) 0

Malus_domestica_v196 (Apple) 0

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 1

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 3

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 2

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 0

Aquilegia_coerulea_v195 5

Triticum_urartu_22 1

Triticum_aestivum_22 (Bread wheat) 3

Oryza_barthii_22 (African wild rice) 1

Oryza_meridionalis_22 2

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 1

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 2

Oryza_sativa_v193 (Rice) 2

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 0

Musa_acuminata_22 (Wild Malaysian banana) 2

Amborella_trichopoda_22 1

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Volvox_carteri_f._nagariensis_ 0

Ostreococcus_sp._RCC809_ 1

Ostreococcus_lucimarinus_CCE9901_ 2

Ostreococcus_tauri_ 1

Bathycoccus_prasinos_ 1

Cyanidioschyzon_merolae_strain_10D_22 1

Cyanidioschyzon_merolae 1

Porphyridium_purpureum_02_2012 1

Albugo_laibachii_22 1

Pythium_arrhenomanes_ATCC_12531_22 0

Phytophthora_infestans_T30-4_ 0

Phaeodactylum_tricornutumCCAP_1055/1 1

Fragilariopsis_cylindrus 1

Thalassiosira_pseudonana_CCMP1335 1

Tetrahymena_thermophila_SB210_1_ 1

Ichthyophthirius_multifiliis_strain_G5_ 1

Babesia_bovis_T2Bo_ 2

Naegleria_gruberi_ 1

Emiliania_huxleyi_CCMP1516_ 1

Thermobaculum_terrenum_ATCC_BAA-798 2

Mycoplasma_penetrans_HF-2 1

Conexibacter_woesei_DSM_14684 1

Frankia_sp._EAN1pec 1

Frankia_alni_ACN14a 1

Streptomyces_sp._PAMC26508 1

Streptomyces_flavogriseus_ATCC_33331 1

Streptomyces_sp._SirexAA-E 1

Streptomyces_griseus_subsp._griseus_NBRC_13350 1

Streptomyces_bingchenggensis_BCW-1 1

Streptomyces_avermitilis_MA-4680 1

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Amycolatopsis_mediterranei_U32 1

Microlunatus_phosphovorus_NM-1 1

Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0

Anaerolinea_thermophila_UNI-1 1

Thermomicrobium_roseum_DSM_5159 1

Sphaerobacter_thermophilus_DSM_20745 1

Herpetosiphon_aurantiacus_DSM_785 3

Roseiflexus_sp._RS-1 4

Roseiflexus_castenholzii_DSM_13941 4

Chloroflexus_sp._MS-G 4

Chloroflexus_sp._Y-400-fl 4

Chloroflexus_aggregans_DSM_9485 4

Chloroflexus_aurantiacus_J-10-fl 3

Deinococcus_maricopensis_DSM_21211 1

Deinococcus_geothermalis_DSM_11300 1

Marinithermus_hydrothermalis_DSM_14884 1

Meiothermus_silvanus_DSM_9946 1

Meiothermus_ruber_DSM_1279 1

Thermus_sp._CCB_US3_UF1 1

Thermus_scotoductus_SA-01 1

Megasphaera_elsdenii_DSM_20460 1

Faecalibacterium_prausnitzii 0

Ruminococcus_albus_7 1

Thermincola_potens_JR 1

Acetobacterium_woodii_DSM_1030 1

Eubacterium_limosum_KIST612 1

Heliobacterium_modesticaldum_Ice1 0

Thermodesulfobium_narugense_DSM_14796 1

Acetohalobium_arabaticum_DSM_5501 1

Halothermothrix_orenii_H_168 1

Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1

Geobacillus_thermoleovorans_CCB_US3_UF5 1

Geobacillus_thermodenitrificans_NG80-2 1

Bacillus_thuringiensis_str._Al_Hakam 1

Gemmatimonas_aurantiaca_T-27 0

Melioribacter_roseus_P3M 1

Ignavibacterium_album_JCM_16511 1

Chloroherpeton_thalassium_ATCC_35110 1

Haliscomenobacter_hydrossis_DSM_1100 1

Saprospira_grandis_str._Lewin 1

Niastella_koreensis_GR20-10 1

Chitinophaga_pinensis_DSM_2588 1

Rhodothermus_marinus_DSM_4252 1

Flexibacter_litoralis_DSM_6794 0

Candidatus_Amoebophilus_asiaticus_5a2 1

Candidatus_Cardinium_hertigii 1

Belliella_baltica_DSM_15883 1

Cyclobacterium_marinum_DSM_745 1

Marivirga_tractuosa_DSM_4126 1

Fibrella_aestuarina 1

Leadbetterella_byssophila_DSM_17132 1

Dyadobacter_fermentans_DSM_18053 1

Cytophaga_hutchinsonii_ATCC_33406 1

Spirosoma_linguale_DSM_74 1

Runella_slithyformis_DSM_19594 1

Parabacteroides_distasonis_ATCC_8503 1

Tannerella_forsythia_ATCC_43037 1

Paludibacter_propionicigenes_WB4 1

Odoribacter_splanchnicus_DSM_20712 1

Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 1

Bacteroides_sp._CF50 1

Prevotella_melaninogenica_ATCC_25845 1

Prevotella_intermedia_17 1

Prevotella_denticola_F0289 1

Prevotella_ruminicola_23 1

Porphyromonas_asaccharolytica_DSM_20707 1

Porphyromonas_gingivalis_ATCC_33277 1

Alistipes_finegoldii_DSM_17242 1

Bacteroides_salanitronis_DSM_18170 1

Bacteroides_helcogenes_P_36-108 1

Bacteroides_vulgatus_ATCC_8482 1

Bacteroides_fragilis_YCH46 1

Pedobacter_saltans_DSM_12145 1

Solitalea_canadensis_DSM_3403 1

Pedobacter_heparinus_DSM_2366 1

Sphingobacterium_sp._21 1

Fluviicola_taffensis_DSM_16823 1

Candidatus_Sulcia_muelleri_DMIN 1

Candidatus_Sulcia_muelleri_SMDSEM 1

Owenweeksia_hongkongensis_DSM_17368 1

Zunongwangia_profunda_SM-A87 1

Krokinobacter_sp._4H-3-7-5 1

Gramella_forsetii_KT0803 1

Lacinutrix_sp._5H-3-7-4 1

Maribacter_sp._HTCC2170 1

Robiginitalea_biformata_HTCC2501 1

Croceibacter_atlanticus_HTCC2559 1

Aequorivita_sublithincola_DSM_14238 1

Zobellia_galactanivorans 1

Muricauda_ruestringensis_DSM_13258 1

Cellulophaga_algicola_DSM_14237 1

Cellulophaga_lytica_DSM_7489 1

Flavobacteriaceae_bacterium_3519-10 1

Polaribacter_sp._MED152 1

Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1

Ornithobacterium_rhinotracheale_DSM_15997 1

Capnocytophaga_canimorsus_Cc5 1

Capnocytophaga_ochracea_DSM_7271 1

Weeksella_virosa_DSM_16922 1

Flavobacterium_indicum_GPTSA100-9 1

Flavobacterium_psychrophilum_JIP02/86 1

Flavobacterium_branchiophilum_FL-15 1

Flavobacterium_columnare_ATCC_49512 1

Flavobacterium_johnsoniae_UW101 1

Blattabacterium_sp._(Nauphoeta_cinerea) 1

Blattabacterium_sp._(Blattella_germanica)_str._Bge 1

Waddlia_chondrophila_WSU_86-1044 1

Candidatus_Protochlamydia_amoebophila_UWE25 1

Parachlamydia_acanthamoebae_UV-7 1

Simkania_negevensis_Z 1

Chlamydophila_pecorum_E58 1

Chlamydia_muridarum_Nigg 1

Chlamydophila_pneumoniae_TW-183 1

Chlamydophila_caviae_GPIC 1

Chlamydophila_felis_Fe/C-56 1

Chlamydophila_abortus_S26/3 1

Chlamydia_psittaci_01DC11 1

Chlamydia_trachomatis_B/Jali20/OT 1

Isosphaera_pallida_ATCC_43644 0

Thermovirga_lienii_DSM_17291 1

Turneriella_parva_DSM_21527 0

Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0

Leptospira_interrogans_serovar_Lai_str._IPAV 0

Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1

Brachyspira_murdochii_DSM_12563 1

Brachyspira_intermedia_PWS/A 1

Brachyspira_pilosicoli_95/1000 1

Brachyspira_hyodysenteriae_WA1 1

Borrelia_garinii_PBi 2

Borrelia_bissettii_DN127 2

Borrelia_afzelii_PKo 2

Borrelia_burgdorferi_B31 1

Borrelia_recurrentis_A1 2

Borrelia_duttonii_Ly 2

Borrelia_crocidurae_str._Achema 2

Borrelia_turicatae_91E135 2

Borrelia_hermsii_DAH 2

Spirochaeta_smaragdinae_DSM_11293 2

Sphaerochaeta_pleomorpha_str._Grapes 0

Sphaerochaeta_globus_str._Buddy 0

Treponema_azotonutricium_ZAS-9 2

Treponema_primitia_ZAS-2 1

Treponema_paraluiscuniculi_Cuniculi_A 1

Treponema_succinifaciens_DSM_2489 1

Treponema_pallidum_subsp._pallidum_SS14 2

Treponema_denticola_ATCC_35405 1

Spirochaeta_africana_DSM_8902 2

Spirochaeta_thermophila_DSM_6192 2

Thermodesulfatator_indicus_DSM_15286 2

Thermodesulfobacterium_sp._OPB45 1

Desulfurispirillum_indicum_S5 1

Calditerrivibrio_nitroreducens_DSM_19672 1

Denitrovibrio_acetiphilus_DSM_12809 1

Deferribacter_desulfuricans_SSM1 1

Flexistipes_sinusarabici_DSM_4947 1

Marinitoga_piezophila_KA3 1

Mesotoga_prima_MesG1.Ag.4.2 1

Kosmotoga_olearia_TBF_19.5.1 1

Fervidobacterium_pennivorans_DSM_9078 1

Fervidobacterium_nodosum_Rt17-B1 1

Thermosipho_melanesiensis_BI429 1

Thermosipho_africanus_TCF52B 1

Thermotoga_lettingae_TMO 1

Thermotoga_thermarum_DSM_5069 1

Thermotoga_sp._RQ2 1

Thermotoga_naphthophila_RKU-10 1

Thermotoga_neapolitana_DSM_4359 1

Thermotoga_maritima_MSB8 1

Thermovibrio_ammonificans_HB-1 1

Desulfurobacterium_thermolithotrophum_DSM_11699 1

Sulfurihydrogenibium_sp._YO3AOP1 1

Persephonella_marina_EX-H1 1

Hydrogenobaculum_sp._SN 1

Hydrogenobaculum_sp._HO 1

Hydrogenobaculum_sp._Y04AAS1 1

Thermocrinis_albus_DSM_14484 1

Aquifex_aeolicus_VF5 1

Hydrogenobacter_thermophilus_TK-6 1

Elusimicrobium_minutum_Pei191 0

uncultured_Termite_group_1_bacterium_phylotype_Rs-D17 1

Dictyoglomus_turgidum_DSM_6724 1

Dictyoglomus_thermophilum_H-6-12 1

Candidatus_Chloracidobacterium_thermophilum_B 1

Candidatus_Solibacter_usitatus_Ellin6076 1

Granulicella_tundricola_MP5ACTX9 2

Granulicella_mallensis_MP5ACTX8 2

Candidatus_Koribacter_versatilis_Ellin345 1

Terriglobus_saanensis_SP1PR4 2

Terriglobus_roseus_DSM_18391 1

Acidobacterium_capsulatum_ATCC_51196 2

Thermodesulfovibrio_yellowstonii_DSM_11347 1

Candidatus_Nitrospira_defluvii 0

Leptospirillum_ferrooxidans_C2-3 1

Ilyobacter_polytropus_DSM_2926 1

Candidatus_Methylomirabilis_oxyfera 0

Acidithiobacillus_ferrivorans_SS3 1

Acidithiobacillus_caldus_SM-1 1

Acidithiobacillus_ferrooxidans_ATCC_53993 2

Bacteriovorax_marinus_SJ 2

Bdellovibrio_bacteriovorus_HD100 1

Arcobacter_nitrofigilis_DSM_7299 1

Desulfarculus_baarsii_DSM_2075 2

Desulfobacca_acetoxidans_DSM_11109 2

Syntrophus_aciditrophicus_SB 2

Desulfomonile_tiedjei_DSM_6799 1

Syntrophobacter_fumaroxidans_MPOB 2

Desulfurivibrio_alkaliphilus_AHT2 2

Desulfotalea_psychrophila_LSv54 1

Desulfobulbus_propionicus_DSM_2032 2

Desulfatibacillum_alkenivorans_AK-01 2

Desulfobacterium_autotrophicum_HRM2 4

Desulfococcus_oleovorans_Hxd3 3

Desulfohalobium_retbaense_DSM_5692 2

Desulfomicrobium_baculatum_DSM_4028 2

Desulfovibrio_piezophilus 2

Desulfovibrio_aespoeensis_Aspo-2 2

Lawsonia_intracellularis_PHE/MN1-00 2

Desulfovibrio_magneticus_RS-1 2

Desulfovibrio_alaskensis_G20 2

Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2

Desulfovibrio_salexigens_DSM_2638 2

Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1

Desulfovibrio_africanus_str._Walvis_Bay 2

Hippea_maritima_DSM_10411 1

Geobacter_daltonii_FRC-32 2

Geobacter_sp._M21 2

Geobacter_uraniireducens_Rf4 1

Geobacter_lovleyi_SZ 1

Geobacter_bemidjiensis_Bem 2

Geobacter_sulfurreducens_KN400 1

Geobacter_metallireducens_GS-15 1

Pelobacter_propionicus_DSM_2379 0

Pelobacter_carbinolicus_DSM_2380 2

Babela_massiliensis 1

Haliangium_ochraceum_DSM_14365 1

Sorangium_cellulosum_'So_ce_56' 3

Anaeromyxobacter_sp._Fw109-5 2

Anaeromyxobacter_dehalogenans_2CP-1 1

Stigmatella_aurantiaca_DW4/3-1 1

Corallococcus_coralloides_DSM_2259 2

Myxococcus_xanthus_DK_1622 2

Myxococcus_fulvus_HW-1 2

Thauera_sp._MZ1T 1

Azoarcus_sp._KH32C 2

Aromatoleum_aromaticum_EbN1 1

Dechlorosoma_suillum_PS 1

Pseudogulbenkiania_sp._NH8B 1

Neisseria_meningitidis_alpha14 1

Neisseria_meningitidis_FAM18 1

Neisseria_lactamica_020-06 1

Neisseria_gonorrhoeae_NCCP11945 1

Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2

beta_proteobacterium_CB 0

Methylibium_petroleiphilum_PM1 1

Thiomonas_arsenitoxydans 1

Thiomonas_intermedia_K12 1

Rubrivivax_gelatinosus_IL144 1

Leptothrix_cholodnii_SP-6 1

Burkholderia_rhizoxinica_HKI_454 1

Burkholderia_phytofirmans_PsJN 2

Burkholderia_phymatum_STM815 1

Burkholderia_xenovorans_LB400 1

Ralstonia_eutropha_JMP134 1

Cupriavidus_taiwanensis_LMG_19424 1

Cupriavidus_metallidurans_CH34 1

Cupriavidus_necator_N-1 1

Ralstonia_eutropha_H16 1

Ralstonia_pickettii_12D 1

Ralstonia_solanacearum_CFBP2957 1

Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 0

Burkholderia_sp._CCGE1002 1

Burkholderia_thailandensis_E264 1

Burkholderia_pseudomallei_1106a 1

Burkholderia_mallei_SAVP1 1

Burkholderia_ambifaria_AMMD 1

Burkholderia_cenocepacia_HI2424 1

Burkholderia_multivorans_ATCC_17616 1

Burkholderia_vietnamiensis_G4 1

Burkholderia_gladioli_BSR3 1

Burkholderia_glumae_BGR1 1

Verminephrobacter_eiseniae_EF01-2 1

Alicycliphilus_denitrificans_K601 1

Ramlibacter_tataouinensis_TTB310 0

Delftia_sp._Cs1-4 1

Delftia_acidovorans_SPH-1 1

Polaromonas_sp._JS666 2

Polaromonas_naphthalenivorans_CJ2 2

Variovorax_paradoxus_S110 0

Rhodoferax_ferrireducens_T118 2

Acidovorax_ebreus_TPSY 1

Acidovorax_sp._KKS102 0

Acidovorax_sp._JS42 1

Acidovorax_citrulli_AAC00-1 1

Acidovorax_avenae_subsp._avenae_ATCC_19860 1

Comamonas_testosteroni_CNB-2 1

Pusillimonas_sp._T7-7 1

Bordetella_petrii_DSM_12804 1

Bordetella_avium_197N 1

Bordetella_pertussis_Tohama_I 1

Bordetella_parapertussis_12822 1

Bordetella_bronchiseptica_RB50 1

Achromobacter_xylosoxidans_A8 1

Achromobacter_xylosoxidans 1

Thiobacillus_denitrificans_ATCC_25259 1

Nitrosospira_multiformis_ATCC_25196 1

Nitrosomonas_sp._Is79A3 1

Nitrosomonas_eutropha_C91 2

Nitrosomonas_europaea_ATCC_19718 2

Sideroxydans_lithotrophicus_ES-1 1

Methylotenera_versatilis_301 0

Methylotenera_mobilis_JLW8 1

Methylovorus_sp._MP688 1

Methylovorus_glucosetrophus_SIP3-4 1

Methylobacillus_flagellatus_KT 1

Magnetococcus_marinus_MC-1 2

Phenylobacterium_zucineum_HLK1 2

Sphingobium_sp._SYK-6 1

Sphingomonas_wittichii_RW1 1

Pseudovibrio_sp._FO-BEG1 1

Tistrella_mobilis_KA081020-065 0

Azospirillum_brasilense_Sp245 1

Gluconacetobacter_xylinus_NBRC_3288 1

Granulibacter_bethesdensis_CGDNIH1 1

Gluconacetobacter_diazotrophicus_PAl_5 1

Acidiphilium_multivorum_AIU301 1

Acidiphilium_cryptum_JF-5 1

Gluconobacter_oxydans_621H 1

Acetobacter_pasteurianus_IFO_3283-01 1

Polymorphum_gilvum_SL003B-26A1 1

Neorickettsia_sennetsu_str._Miyayama 1

Neorickettsia_risticii_str._Illinois 1

Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1

Wolbachia_sp._wRi 1

Orientia_tsutsugamushi_str._Boryong 1

Starkeya_novella_DSM_506 2

Xanthobacter_autotrophicus_Py2 1

Azorhizobium_caulinodans_ORS_571 1

Methylobacterium_chloromethanicum_CM4 1

Methylobacterium_extorquens_AM1 1

Methylobacterium_sp._4-46 1

Methylobacterium_populi_BJ001 2

Methylobacterium_nodulans_ORS_2060 1

Methylobacterium_radiotolerans_JCM_2831 1

Parvibaculum_lavamentivorans_DS-1 1

Ochrobactrum_anthropi_ATCC_49188 1

Brucella_microti_CCM_4915 1

Brucella_pinnipedialis_B2/94 1

Brucella_canis_ATCC_23365 1

Brucella_suis_ATCC_23445 1

Brucella_melitensis_ATCC_23457 1

Brucella_ovis_ATCC_25840 1

Brucella_abortus_S19 1

Sinorhizobium_medicae_WSM419 1

Sinorhizobium_meliloti_AK83 1

Agrobacterium_radiobacter_K84 1

Agrobacterium_vitis_S4 1

Candidatus_Liberibacter_asiaticus_str._psy62 1

Mesorhizobium_loti_MAFF303099 1

Methylocella_silvestris_BL2 2

Beijerinckia_indica_subsp._indica_ATCC_9039 1

Pelagibacterium_halotolerans_B2 1

Rhodomicrobium_vannielii_ATCC_17100 2

Hyphomicrobium_sp._MC1 2

Hyphomicrobium_denitrificans_ATCC_51888 1

Oligotropha_carboxidovorans_OM4 1

Rhodopseudomonas_palustris_BisA53 1

Nitrobacter_winogradskyi_Nb-255 1

Nitrobacter_hamburgensis_X14 1

Bradyrhizobium_japonicum_USDA_110 2

Bradyrhizobium_sp._ORS_278 1

Methylocystis_sp._SC2 1

Bartonella_tribocorum_CIP_105476 1

Bartonella_clarridgeiae_73 1

Bartonella_henselae_str._Houston-1 1

Bartonella_grahamii_as4aup 1

Bartonella_quintana_str._Toulouse 1

Bartonella_bacilliformis_KC583 1

Cellvibrio_japonicus_Ueda107 1

Tolumonas_auensis_DSM_9187 1

Ferrimonas_balearica_DSM_9799 1

Marinobacter_adhaerens_HP15 1

Marinobacter_sp._BSs20148 1

Marinobacter_hydrocarbonoclasticus_ATCC_49840 1

Marinobacter_aquaeolei_VT8 1

Hahella_chejuensis_KCTC_2396 1

Alcanivorax_borkumensis_SK2 1

Marinomonas_posidonica_IVIA-Po-181 1

Marinomonas_sp._MWYL1 2

Marinomonas_mediterranea_MMB-1 1

Chromohalobacter_salexigens_DSM_3043 1

Halomonas_elongata_DSM_2581 1

Methylococcus_capsulatus_str._Bath 1

Rhodanobacter_denitrificans 1

Frateuria_aurantia_DSM_6220 0

Halothiobacillus_neapolitanus_c2 1

Spiribacter_sp._UAH-SP71 1

Alkalilimnicola_ehrlichii_MLHE-1 1

Thioalkalivibrio_sulfidophilus_HL-EbGr7 1

Thioalkalivibrio_sp._K90mix 1

Halorhodospira_halophila_SL1 1

Allochromatium_vinosum_DSM_180 1

Thiocystis_violascens_DSM_198 1

Nitrosococcus_watsonii_C-113 1

Nitrosococcus_halophilus_Nc4 1

Nitrosococcus_oceani_ATCC_19707 1

Legionella_longbeachae_NSW150 2

Legionella_pneumophila_str._Corby 1

Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1

Candidatus_Vesicomyosocius_okutanii_HA 1

Yersinia_pestis_Pestoides_F 1

Serratia_sp._AS12 1

Serratia_plymuthica_AS9 1

Klebsiella_variicola_At-22 1

Klebsiella_pneumoniae_NTUH-K2044 1

Citrobacter_rodentium_ICC168 1

Azotobacter_vinelandii_DJ 1

Pseudomonas_sp._TKP 1

Pseudomonas_sp._UW4 1

Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1

Pseudomonas_entomophila_L48 1

Pseudomonas_syringae_pv._tomato_str._DC3000 1

Pseudomonas_stutzeri_A1501 1

Pseudomonas_fulva_12-X 1

Pseudomonas_putida_F1 1

Pseudomonas_protegens_Pf-5 1

Pseudomonas_fluorescens_SBW25 1

Pseudomonas_mendocina_ymp 1

Pseudomonas_aeruginosa_UCBPP-PA14 1

Pseudomonas_sp._VLB120 1

Psychrobacter_sp._G 1

Psychrobacter_sp._PRwf-1 1

Psychrobacter_arcticus_273-4 1

Psychrobacter_cryohalolentis_K5 1

Moraxella_catarrhalis_RH4 1

Acinetobacter_oleivorans_DR1 1

Acinetobacter_calcoaceticus_PHEA-2 1

Acinetobacter_sp._ADP1 1

Methylophaga_sp._JAM1 1

Thiomicrospira_crunogena_XCL-2 1

Thioalkalimicrobium_cyclicum_ALM1 1

Methanosarcina_barkeri_str._Fusaro 1

Methanospirillum_hungatei_JF-1 1

Methanosphaera_stadtmanae_DSM_3091 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 2

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 1

Felis_catus_69 (Domestic cat) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 2

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 2

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 1

Takifugu_rubripes_69_4 (Torafugu) 1

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 3

Caenorhabditis_elegans_69_215 (Roundworm) 1

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 1

Arabidopsis_thaliana_10 (Thale cress) 2

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 4

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Lotus_japonicus__(Early_assembly) 1

Malus_x_domestica_(Duplicate) (Apple) 0

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 0

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1

NCBI_plasmid_sequences_(Plasmids) 6

TargetDB__(Targets) 11

STRING_v9.0.5_(STRING) 484

Uniprot_2018_03_genome 126420

NCBI_2017_08_genome 19383

Protozoadb_2010_08_(Protozoadb) 1

Core_Eukaryotic_Genes_458_(CEGMA) 3

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Domain combinations for _gap_,88697,_gap_,52540,54211 superfamilies in groups of genomes