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Domain combinations for _gap_,89260 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

89260 - Collagen-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Microcystis_aeruginosa_NIES-843 0
Gloeobacter_violaceus_PCC_7421 0
Rivularia_sp._PCC_7116 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7120 0
Anabaena_sp._90 0
Actinoplanes_sp._SE50/110 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Anaerolinea_thermophila_UNI-1 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_proteolyticus_MRP 0
Thermincola_potens_JR 0
Eubacterium_limosum_KIST612 0
Clostridium_phytofermentans_ISDg 1
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Roseburia_hominis_A2-183 0
Roseburia_intestinalis 0
Clostridium_novyi_NT 0
Clostridium_tetani_E88 1
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 0
Mahella_australiensis_50-1_BON 0
Lactobacillus_crispatus_ST1 0
Lactobacillus_amylovorus_GRL1118 0
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_acidophilus_30SC 0
Streptococcus_agalactiae_A909 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sp._AT1b 0
Exiguobacterium_sibiricum_255-15 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_terrae_HPL-003 1
Paenibacillus_polymyxa_M1 2
Geobacillus_thermoglucosidasius_C56-YS93 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_sp._WCH70 0
Bacillus_weihenstephanensis_KBAB4 2
Bacillus_megaterium_DSM_319 0
Chlorobium_chlorochromatii_CaD3 0
Haliscomenobacter_hydrossis_DSM_1100 0
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 1
Brachyspira_murdochii_DSM_12563 0
Brachyspira_intermedia_PWS/A 0
Brachyspira_pilosicoli_95/1000 0
Brachyspira_hyodysenteriae_WA1 0
Treponema_azotonutricium_ZAS-9 0
Treponema_primitia_ZAS-2 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Sorangium_cellulosum_'So_ce_56' 0
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Rubrivivax_gelatinosus_IL144 0
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 0
Shewanella_denitrificans_OS217 0
Kangiella_koreensis_DSM_16069 0
Methylomonas_methanica_MC09 0
Allochromatium_vinosum_DSM_180 0
Nitrosococcus_watsonii_C-113 0
Nitrosococcus_halophilus_Nc4 0
Nitrosococcus_oceani_ATCC_19707 0
Dickeya_zeae_Ech1591 0
Pseudomonas_sp._TKP 0
Pseudomonas_fluorescens_SBW25 0
Methanosaeta_harundinacea_6Ac 1
Methanosarcina_acetivorans_C2A 0
Methanosarcina_barkeri_str._Fusaro 0
Aciduliprofundum_boonei_T469 0

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Strains
Genome     Number
Trypanosoma_brucei_Lister_427_v4.1 0
Dactylococcopsis_salina_PCC_8305 0
Synechococcus_sp._CC9605 0
Synechococcus_sp._WH_8102 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._ATCC_51142 0
Cyanobacterium_aponinum_PCC_10605 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Anabaena_cylindrica_PCC_7122 0
Roseburia_intestinalis_XB6B4 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_tetani_genome_12124569 1
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_SA20-06 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 0
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 2
Paenibacillus_polymyxa_E681 1
Geobacillus_sp._Y4.1MC1 0
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_B4264 1
Singulisphaera_acidiphila_DSM_18658 0
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Spirochaeta_thermophila_DSM_6578 1
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 0
Myxococcus_stipitatus_DSM_14675 1
Paracoccus_aminophilus_JCM_7686 0
Bradyrhizobium_oligotrophicum_S58 0
Thioalkalivibrio_nitratireducens_DSM_14787 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 1851
NCBI_2017_08_genome 804
Protozoadb_2010_08_(Protozoadb) 0

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