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Domain combinations for _gap_,89260,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

89260 - Collagen-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Rivularia_sp._PCC_7116 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7120 0
Anabaena_sp._90 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Anaerolinea_thermophila_UNI-1 0
Herpetosiphon_aurantiacus_DSM_785 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Thermincola_potens_JR 0
Eubacterium_rectale_M104/1 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Mahella_australiensis_50-1_BON 1
Lactobacillus_crispatus_ST1 0
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_acidophilus_30SC 1
Streptococcus_agalactiae_A909 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_polymyxa_M1 0
Bacillus_megaterium_DSM_319 1
Chlorobium_chlorochromatii_CaD3 0
Haliscomenobacter_hydrossis_DSM_1100 0
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 0
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Brachyspira_murdochii_DSM_12563 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_pilosicoli_95/1000 1
Brachyspira_hyodysenteriae_WA1 1
Treponema_azotonutricium_ZAS-9 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Sorangium_cellulosum_'So_ce_56' 1
Rubrivivax_gelatinosus_IL144 0
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 1
Shewanella_denitrificans_OS217 1
Allochromatium_vinosum_DSM_180 1
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 1
Dickeya_zeae_Ech1591 1
Pseudomonas_sp._TKP 1
Pseudomonas_fluorescens_SBW25 1
Methanosaeta_harundinacea_6Ac 0
Methanosarcina_acetivorans_C2A 1
Methanosarcina_barkeri_str._Fusaro 1
Aciduliprofundum_boonei_T469 1

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Strains
Genome     Number
Trypanosoma_brucei_Lister_427_v4.1 1
Dactylococcopsis_salina_PCC_8305 0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._ATCC_51142 0
Anabaena_cylindrica_PCC_7122 0
Roseburia_intestinalis_XB6B4 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2
Lactobacillus_amylovorus_GRL_1112 1
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Streptococcus_agalactiae_ILRI112 1
Streptococcus_agalactiae_ILRI005 1
Streptococcus_agalactiae_09mas018883 1
Streptococcus_agalactiae_SA20-06 1
Streptococcus_agalactiae_GD201008-001 1
Streptococcus_agalactiae_NEM316 1
Streptococcus_agalactiae_2603V/R 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Singulisphaera_acidiphila_DSM_18658 2
Brachyspira_pilosicoli_WesB 1
Brachyspira_pilosicoli_B2904 1
Brachyspira_pilosicoli_P43/6/78 0
Sorangium_cellulosum_So0157-2 1
Anaeromyxobacter_sp._K 0
Paracoccus_aminophilus_JCM_7686 0
Thioalkalivibrio_nitratireducens_DSM_14787 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 3
STRING_v9.0.5_(STRING) 19
Uniprot_2018_03_genome 3335
NCBI_2017_08_genome 1517
TargetDB__(Targets) 1
Protozoadb_2010_08_(Protozoadb) 1

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